Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N15
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...   109   2e-25
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...   109   2e-25
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    50   2e-07
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    49   4e-07
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    31   0.10 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   1.7  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    26   3.0  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   5.2  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   6.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   6.8  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   6.8  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score =  109 bits (263), Expect = 2e-25
 Identities = 49/86 (56%), Positives = 64/86 (74%)
 Frame = +3

Query: 9   LYQTFQRIVENVNVIIATYSDDSGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYAD 188
           LYQ F R+VE+VNV+I+TY D    +G+ +V P KG+V F SGLHGWAFT++QF+  YA 
Sbjct: 174 LYQNFARVVESVNVVISTYYDKV--LGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAK 231

Query: 189 KFKIDLVKLMNRLWGENFFNANSKPY 266
           KF ID  K+M RLWGEN+FN  +K +
Sbjct: 232 KFGIDRNKMMQRLWGENYFNPKTKKW 257



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +3

Query: 255 SKPYVVVQETRKRKGLKEGLPDLNQYLDTL 344
           SKP  +V E RKRKGLKE +PD  +Y D L
Sbjct: 813 SKPGQIVCEARKRKGLKENVPDYTEYYDRL 842


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score =  109 bits (263), Expect = 2e-25
 Identities = 49/86 (56%), Positives = 64/86 (74%)
 Frame = +3

Query: 9   LYQTFQRIVENVNVIIATYSDDSGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYAD 188
           LYQ F R+VE+VNV+I+TY D    +G+ +V P KG+V F SGLHGWAFT++QF+  YA 
Sbjct: 174 LYQNFARVVESVNVVISTYYDKV--LGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAK 231

Query: 189 KFKIDLVKLMNRLWGENFFNANSKPY 266
           KF ID  K+M RLWGEN+FN  +K +
Sbjct: 232 KFGIDRNKMMQRLWGENYFNPKTKKW 257



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +3

Query: 255 SKPYVVVQETRKRKGLKEGLPDLNQYLDTL 344
           SKP  +V E RKRKGLKE +PD  +Y D L
Sbjct: 813 SKPGQIVCEARKRKGLKENVPDYTEYYDRL 842


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
 Frame = +3

Query: 27  RIVENVNVIIATY--------SDDSGPMGE--VRVDPSKGSVGFGSGLHGWAFTLKQFSE 176
           R+VE VN +I T+        +D+   + +  +   P +G+V F S   GWAF L QFSE
Sbjct: 176 RLVEQVNAVIGTFYTGELMQLADNDEVISDEGIYFAPEQGNVVFASAYDGWAFCLDQFSE 235

Query: 177 MYADKFKIDLVKLMNRLWGENFFNANSK 260
            Y  K  +    L   LWG+ + +  +K
Sbjct: 236 FYEKKLGLKQKALTKCLWGDYYLDPKTK 263


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 12  YQTFQRIVENVNVIIATYSDDSGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 191
           Y   + +++ VN  I   S D     + RV P  G+V F S   G+ FTL  F+++Y D+
Sbjct: 286 YHKLRHVIDEVNDNICQISKDL----KYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDR 341

Query: 192 F-KIDLVKLMNRLWGENFFNANSKPY 266
              ID+     RLWG+ +F++ ++ +
Sbjct: 342 HGGIDVDLFSKRLWGDIYFDSKTRKF 367


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 150 AFTLKQFSEMYADKFKIDLVKLMNRLWGENFFN 248
           A+ +  + E Y DK K  ++K    +W   FFN
Sbjct: 153 AYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFN 185


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 163  LSVNAQPWRPD--PKPTDPLLGSTRTSPIGPL 74
            LS N  P RPD  P P  PLL S   SP+ P+
Sbjct: 1046 LSRNNSP-RPDFLPLPNQPLLHSNLHSPVSPV 1076


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +1

Query: 340 RCKTLS*CK*YLHCNMYIYIYICNVIDGASRTLHHNLFDYPSYFFNKIYH---LSFC 501
           RCK L      +    Y ++   N++   SR+ H N+  +   F + +Y+   L +C
Sbjct: 34  RCKDLKYAIKCIKKPAYTFLQEVNILRQLSRSRHRNIIHFVESFEDNVYYYVVLEYC 90


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 186 DKFKIDLVKLMNRLWGENFFNANSKPYVVVQE 281
           +KF+ +++  +N ++GEN F+ N   Y  V +
Sbjct: 220 EKFEKNILASVNAVFGENLFDENDWEYKSVYD 251


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 361 CK*YLH-CNMYIYIYICNVIDGASRTLHH 444
           CK  ++ C M + IY+C++    S  L H
Sbjct: 47  CKSQIYDCRMAVKIYVCSITANKSTNLKH 75


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 198 IDLVKLMNRLWGENFFNANSKPYVVVQETRKRKGLKE 308
           +  + L    W  NF+  N +  V   +  K+KG KE
Sbjct: 585 LSFIPLAAAFWQSNFYLGNQQNAVEGDQDHKKKGDKE 621


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 265 YGLELALKKFSPHSLFMSFTRSI 197
           YGLE   K  +P  LFM  T  I
Sbjct: 247 YGLEFVTKSIAPWKLFMIITGGI 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,931
Number of Sequences: 5004
Number of extensions: 38516
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)