Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N15
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   142   2e-34
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   142   2e-34
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z81504-3|CAB04117.2|  349|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U49944-1|AAA93415.3|  508|Caenorhabditis elegans Long protein 2 ...    28   4.7  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score =  142 bits (343), Expect = 2e-34
 Identities = 62/97 (63%), Positives = 75/97 (77%)
 Frame = +3

Query: 9   LYQTFQRIVENVNVIIATYSDDSGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYAD 188
           L+QTFQRIVEN+NVIIATY DD GPMG + VDPS G+VGFGSGLHGWAFTLKQF+EMYA 
Sbjct: 186 LFQTFQRIVENINVIIATYGDDDGPMGPIMVDPSIGNVGFGSGLHGWAFTLKQFAEMYAG 245

Query: 189 KFKIDLVKLMNRLWGENFFNANSKPYVVVQETRKRKG 299
           KF + + KLM  LWG+ FF+  +K +   Q    ++G
Sbjct: 246 KFGVQVDKLMKNLWGDRFFDLKTKKWSSTQTDESKRG 282



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +3

Query: 249 ANSKPYVVVQETRKRKGLKEGLPDLNQYLDTL 344
           A +KP  +V +TRKRKGLKEG+P L+ YLD +
Sbjct: 821 AGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score =  142 bits (343), Expect = 2e-34
 Identities = 62/97 (63%), Positives = 75/97 (77%)
 Frame = +3

Query: 9   LYQTFQRIVENVNVIIATYSDDSGPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYAD 188
           L+QTFQRIVEN+NVIIATY DD GPMG + VDPS G+VGFGSGLHGWAFTLKQF+EMYA 
Sbjct: 186 LFQTFQRIVENINVIIATYGDDDGPMGPIMVDPSIGNVGFGSGLHGWAFTLKQFAEMYAG 245

Query: 189 KFKIDLVKLMNRLWGENFFNANSKPYVVVQETRKRKG 299
           KF + + KLM  LWG+ FF+  +K +   Q    ++G
Sbjct: 246 KFGVQVDKLMKNLWGDRFFDLKTKKWSSTQTDESKRG 282



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +3

Query: 249 ANSKPYVVVQETRKRKGLKEGLPDLNQYLDTL 344
           A +KP  +V +TRKRKGLKEG+P L+ YLD +
Sbjct: 821 AGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
 Frame = +3

Query: 12  YQTFQRIVENVNVIIA------TYSDDS-GPMGE----VRVDPSKGSVGFGSGLHGWAFT 158
           YQ   R++E VN  I+         DD+ G + E    +  DP+KG+V F S LH +AF 
Sbjct: 160 YQHMSRLIEGVNSCISQVLGGIVLEDDTWGNIEESEAKLHFDPAKGNVIFSSALHSYAFG 219

Query: 159 LKQFSEMYADKFKIDLVKLMNRLWGE 236
            + F+++ A+K K++   L+  ++G+
Sbjct: 220 CEDFAQIAAEKMKVEKSALLPAMFGD 245


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
 Frame = +3

Query: 12  YQTFQRIVENVNVIIA------TYSDDS-GPMGE----VRVDPSKGSVGFGSGLHGWAFT 158
           YQ   R++E VN  I+         DD+ G + E    +  DP+KG+V F S LH +AF 
Sbjct: 160 YQHMSRLIEGVNSCISQVLGGIVLEDDTWGNIEESEAKLHFDPAKGNVIFSSALHSYAFG 219

Query: 159 LKQFSEMYADKFKIDLVKLMNRLWGE 236
            + F+++ A+K K++   L+  ++G+
Sbjct: 220 CEDFAQIAAEKMKVEKSALLPAMFGD 245


>Z81504-3|CAB04117.2|  349|Caenorhabditis elegans Hypothetical
           protein F15H9.3 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 146 LGVYTQTVLRDVRRQVQNRPSETHEQTVGRELLQCQLQAI 265
           LG++T T+LR VR+ +  +  + H+  +   ++Q  +  +
Sbjct: 217 LGIHTMTILRKVRKSMSRQTYQMHKNALFSLVMQIVIPGV 256


>U49944-1|AAA93415.3|  508|Caenorhabditis elegans Long protein 2
           protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 9   LYQTFQRIVENVNVIIATYSDDS-GPMGEVRVDPSKGSVGFGS 134
           ++   +  +E  + + A +  +S GP+GE+ + PSK SV F S
Sbjct: 299 IFSVIRIFIERKSYVYAEHVFNSCGPLGEMIIHPSKHSVHFQS 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,101,611
Number of Sequences: 27780
Number of extensions: 215602
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)