Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N14
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 219 3e-58
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 219 3e-58
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 165 6e-42
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 97 2e-21
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 44 2e-05
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 29 0.72
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 28 0.95
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 26 3.8
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.1
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 26 5.1
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 6.7
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 8.9
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 25 8.9
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 8.9
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 219 bits (535), Expect = 3e-58
Identities = 102/167 (61%), Positives = 119/167 (71%)
Frame = +2
Query: 20 EGAMADENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCE 199
EG M +ENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L E
Sbjct: 673 EGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVE 732
Query: 200 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 379
IQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQA
Sbjct: 733 IQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQA 792
Query: 380 FPQCVFDHWQILPGDPCEPNSKPYVVVQETRTRKVLEGRSPRFESIF 520
FPQ VFDHW + GDP +P SKP +V E R RK L+ P + +
Sbjct: 793 FPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYY 839
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 219 bits (535), Expect = 3e-58
Identities = 102/167 (61%), Positives = 119/167 (71%)
Frame = +2
Query: 20 EGAMADENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCE 199
EG M +ENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L E
Sbjct: 673 EGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVE 732
Query: 200 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 379
IQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQA
Sbjct: 733 IQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQA 792
Query: 380 FPQCVFDHWQILPGDPCEPNSKPYVVVQETRTRKVLEGRSPRFESIF 520
FPQ VFDHW + GDP +P SKP +V E R RK L+ P + +
Sbjct: 793 FPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYY 839
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 165 bits (400), Expect = 6e-42
Identities = 74/143 (51%), Positives = 99/143 (69%)
Frame = +2
Query: 20 EGAMADENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCE 199
EG + DE +R V F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E
Sbjct: 789 EGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVE 848
Query: 200 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 379
+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQA
Sbjct: 849 VHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQA 908
Query: 380 FPQCVFDHWQILPGDPCEPNSKP 448
Q VFDHWQ++PGDP + + KP
Sbjct: 909 MCQMVFDHWQVVPGDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 97.1 bits (231), Expect = 2e-21
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 9/148 (6%)
Frame = +2
Query: 11 IRHEGAMADENLRGV-----RFNIYDVTLHTDAIHRGG----GQIIPTTRRCLYACLLTA 163
I H+G + E ++G+ +F+I D + + + GQ+I + + L
Sbjct: 799 ITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGW 858
Query: 164 QPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGF 343
PRLM +Y C++Q +G +YGV+++RRG V +E GTP F+VKA +PV ESFGF
Sbjct: 859 SPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGF 918
Query: 344 TADLRSNTGGQAFPQCVFDHWQILPGDP 427
++ T G A+PQ +F +++L +P
Sbjct: 919 AVEILKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +2
Query: 155 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNES 334
L A P ++EP+ I P GG+ G L++R+ + + F ++A +P+N
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725
Query: 335 FGFTADLRSNTGGQ 376
F +++D+R+ T G+
Sbjct: 726 FSYSSDIRALTKGK 739
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 28.7 bits (61), Expect = 0.72
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 401 HWQILPGDPCEPNSKPYVVVQETRTRKVLE 490
H+Q L GDP + PY VQ RK++E
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRKIIE 107
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 318 CPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTP 443
CP+ + + + GR+S S + + S ET+ASPTP
Sbjct: 88 CPALNNRIRSLNASKSQSGRKSLSPNPSSVPSSTETKASPTP 129
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 420 ETRASPTPSHTLSYRKQERGKCLKEGLPDLN 512
E PTPSHTL + + + L++ L D++
Sbjct: 427 EDEGKPTPSHTLLHNRDHELERLEKVLKDIH 457
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 119 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 295
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 296 MFVVKAY 316
+K+Y
Sbjct: 445 ALALKSY 451
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +3
Query: 267 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTP 443
++ R P P S R P S + P P RS +A SI P+ R++P P
Sbjct: 307 NKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP--LPPQGRSAPPP 363
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 528 ACPNIDSNRGDLPSSTFLVLVSCTTTYGLELGSHGSPGR 412
AC N+D + G L T + LV C SHG P R
Sbjct: 448 ACFNLDDSAGSLLPCTEMKLVDCEEG---NYNSHGHPPR 483
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +3
Query: 330 SRSGSPPTCAPTPEGRRSRSAS---SITGRSCPETRASPTPSHTLSYRK 467
+R SP P + + S +I + P T A P PSH ++ RK
Sbjct: 533 TRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTPAPPLPSHPMATRK 581
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 230 IYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGF 343
++ LNR++ + F Q+ V+ A L V +FGF
Sbjct: 275 LFDHLNRKKTNNFNTHQILSQSDVVLNALLSVATAFGF 312
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 419 GDPCEPNSKPYVVVQETRTRKVLEGRSPRFESI 517
G+P E +P + VQ+T K ++ S ESI
Sbjct: 94 GNPQESKQEPNLEVQQTEKEKDVDSASAENESI 126
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 219 ATSGHWISQRYTGSISLGCAVNRHAYR 139
A +G +IS YTG+ +L V RH R
Sbjct: 437 ANTGDYISDLYTGTPALKGDVTRHGTR 463
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,602
Number of Sequences: 5004
Number of extensions: 55008
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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