Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N13
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 1.8
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 5.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 5.6
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 5.6
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 5.6
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 5.6
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 7.4
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 7.4
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 9.8
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -2
Query: 116 CNVDTASLDEHPSIHSWYISGSISV*LLTNTSTS 15
C++++AS+ + + W + S+S + TNT++S
Sbjct: 340 CSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSS 373
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 545 AMKTTAPYFLASGSDNRKVERMLATTFPGISSTALKTRRTLSN 417
A K+ A A SD + M +TTFP + T+ TLSN
Sbjct: 199 ASKSAAASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSN 241
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 461 PGTLLPTSVPLSYYLNHLPKNTVP 532
PG + PTS+P SYY + P+ +P
Sbjct: 494 PGAV-PTSIPQSYYPIYSPEMAMP 516
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 247 IFQIDEPTKHMLIEKYYDLDDAVIRELLGRK-LSSRHRKD-LDEV 375
+ +DEPT H+ +E L++ + E+ G L + H +D L+EV
Sbjct: 441 LMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLITCHTQDTLNEV 485
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 127 AARKLGASVELI--ASDVLDHYRTFALLERLLTVPSKLSEQMIFQ 255
A +LG S E I A DV++ YR A+L L+ + ++ +F+
Sbjct: 1117 ADEELGWSAEQICLADDVINEYRRKAILCNLMALSLPFTQDKLFK 1161
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 427 VRRVFKAVEEIPGNVVANIRSTFLLSEPLAKKYGAVVF 540
VR +F ++ ++ ++ TF S+P KKY A F
Sbjct: 214 VRGLFYSISQLRDSMTYLYDYTFYFSDPSPKKYAADAF 251
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 5.6
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 236 DNFDGTVR--SLSKRANVL*WSKTSLAINSTEAPSFRAAPR*CNVDTASLDEHPSIHSWY 63
DNF+ ++R + + R+++ + S + +PS AP NVDT S+D S+ S +
Sbjct: 224 DNFNISIRPNTTNYRSSI---QENSNGNRDSISPSAYDAPLLHNVDTQSIDGFVSVASHF 280
Query: 62 ISGS 51
S S
Sbjct: 281 SSAS 284
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 363 VFSMSRRQFSAEKLSDDSII*VVVF 289
+F+ FS KLSDDSI + +F
Sbjct: 204 IFNFKNGSFSTRKLSDDSINHIQLF 228
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 68 SYGLRDAHLVKQCLHCINVE 127
S G RD H + C +C+++E
Sbjct: 287 SLGFRDIHAKEACQYCVSLE 306
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -1
Query: 414 SPTATERSTRSLRHLVQVFSMSRRQ--FSAEKLSDDSII 304
SPTAT+ S+ L H + S+ RR+ S + +DD++I
Sbjct: 209 SPTATDTSSSPLEH---IRSLRRRKSLLSRQVKADDAVI 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,794
Number of Sequences: 5004
Number of extensions: 47068
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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