Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N13
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 29 2.5
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 2.5
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 28 4.3
07_03_1271 + 25356087-25356232,25356419-25356543,25356650-253566... 28 5.7
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 5.7
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 28 5.7
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 28 5.7
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 27 7.5
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 27 7.5
01_01_0788 + 6111890-6112002,6112121-6112265,6113012-6113086,611... 27 7.5
10_02_0169 - 6142199-6142581,6143015-6143095,6143313-6143691,614... 27 10.0
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 27 10.0
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 286 EKYYDLDDAVIR--ELLGRKLSSRHRKDLDEVSERSGAPLRCCRRQFDN 426
EKY +DA++ EL ++L+S+++ + S P RR+FDN
Sbjct: 117 EKYARREDAILHALELERKQLASKYQNQGFRSDDISSVPFADMRREFDN 165
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 304 DDAVIRELLGRKLSSRHRKDLDEVSERSGAPLRCCR 411
D + +R GR+ + R R D+DE SE G LRC +
Sbjct: 482 DPSKLRVKKGRRRTRRIRNDMDE-SEAGGRTLRCSK 516
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 374 CLRDRVLLSVAVGDSSTTSVAFSKP*KRSPGTLLPTSVPLSYYLNHLPKNTVP 532
C+ + + SS TSV S+ + G+L P S++ +HL K+TVP
Sbjct: 763 CINNNPQMDYLDTSSSATSVCLSQ----ADGSLQQNFPPSSFHQHHLLKDTVP 811
>07_03_1271 +
25356087-25356232,25356419-25356543,25356650-25356696,
25356792-25356869,25356949-25357073,25357312-25357372,
25357723-25357785,25358262-25358331,25358740-25358945,
25359074-25359253
Length = 366
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 335 ENCLRDIEKTWTRC-LRDRVLLSVAVGDSSTTSVAFSKP*KRSPGTLLPT 481
E+ LR+ +TR LR RVL+ V+ D STT + ++ RSP + PT
Sbjct: 35 EHTLRENIAAYTRIILRPRVLVDVSKIDMSTTLLGYT---MRSPIIVAPT 81
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 518 LASGSDNRKVERMLATTFPGISSTALKTRRTLSNCRLQQRRGAPDLSDTSSKSFLC 351
+ DN K E L+ P +ST+ K R LSN + + + +P + S + C
Sbjct: 613 VTDNDDNLKEESALSVEEPNTTSTSSKNTRKLSNAK-ESKDESPQVEPKPSSANDC 667
>02_02_0473 -
10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 292 YYDLDDAVIRELLGRKLSSRHRKDLDEVSERSGAPLRCCRR 414
+Y D + +R GR+ + R R D+DE SE G L CC +
Sbjct: 631 FYIPDPSKLRVKKGRRQTRRIRNDMDE-SEAGGRTL-CCSK 669
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -2
Query: 470 TFPGISSTALKTRRTLSNCRLQQRRGAPDLSDTSSKSFLCLEDSFLPRSSRMTASSK 300
++P + R N RL R P L+DT+S SFL E S P + K
Sbjct: 495 SYPNDHKPQPEARNVTENSRLSGRE--PTLTDTASDSFLNPESSTNPHEQELMGCVK 549
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 191 HSPFWRDSSRFHQS 232
H+P W++SSRFH S
Sbjct: 234 HTPSWQNSSRFHNS 247
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 27.5 bits (58), Expect = 7.5
Identities = 24/106 (22%), Positives = 45/106 (42%)
Frame = +1
Query: 37 NYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAARKLGASVELIASDVLDHYRTFALLERLL 216
N + + P I W+E C A LH + +V +IA H +T A+L+ L+
Sbjct: 188 NSSSVVPCILPPWLESCQIPSAAEELHSIMCNKNNIRNVLVIAD--AGHGKT-AILDSLV 244
Query: 217 TVPSKLSEQMIFQIDEPTKHMLIEKYYDLDDAVIRELLGRKLSSRH 354
S+++ + LI YY++ + +R ++ + H
Sbjct: 245 ATAGITSQEV------TESNSLISLYYEMPEDSLRSYKDKRAGNGH 284
>01_01_0788 +
6111890-6112002,6112121-6112265,6113012-6113086,
6114171-6114250,6115500-6115569,6115664-6115759,
6116633-6116756,6116921-6116967,6117044-6117127,
6117199-6117252,6117451-6117551,6118744-6118834,
6119989-6120153,6121341-6121412,6122025-6122111,
6122899-6122952,6122992-6123062,6123882-6124029
Length = 558
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 298 DLDDAVIRELLGRKLSSRHRKDLDEVSERSGAPLRCCRRQFDNVRRVFKA 447
+ D+A +R K R+ L + +R G PL C R + VR+ A
Sbjct: 427 EFDEAKLRFAAAEKKVIDIREQLVRIIKRFGIPLTSCDRDMEAVRKAIIA 476
>10_02_0169 -
6142199-6142581,6143015-6143095,6143313-6143691,
6144019-6144372
Length = 398
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 91 SSEAVSTLHQRGAARKLGASVELIASDVLD 180
S E V + RGA LGASV ++ DV D
Sbjct: 260 SVENVKAITTRGALCDLGASVSVMPKDVFD 289
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -1
Query: 213 ESLQKGECSVVVQNIAGYQLNRGTKFSCCSTLMQCRHC 100
+ +K E ++ A Y+ + CC+ + CRHC
Sbjct: 44 DDYEKLEEGIMQYGCAHYRRRCRIRAPCCNEIFDCRHC 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,625
Number of Sequences: 37544
Number of extensions: 290380
Number of successful extensions: 861
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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