Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N13
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040652-4|AAB95021.2| 736|Caenorhabditis elegans Hypothetical ... 30 0.96
Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical pr... 29 1.7
DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor ... 29 1.7
AL132841-6|CAB60331.2| 494|Caenorhabditis elegans Hypothetical ... 29 1.7
AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear recep... 28 3.9
AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormo... 28 3.9
AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical ... 27 9.0
>AF040652-4|AAB95021.2| 736|Caenorhabditis elegans Hypothetical
protein T05A8.4 protein.
Length = 736
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +1
Query: 124 GAARKLGASVELIASDVLDHYRTFALLERLLTVPSKLSEQMIFQIDEPTKHMLIEKYY 297
G K AS+E++ +D++ ++ +L + + K S++ + ID+P ++ +Y
Sbjct: 170 GHQMKPDASIEMLYADMVAKFKADSLFKATVQPDDKNSQRHVLLIDQPQLNLFARDFY 227
>Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical
protein F39D8.2b protein.
Length = 241
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +1
Query: 196 ALLERLLTVPSKLSEQMIFQIDEPTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 366
AL E++ + P +++ + E K ++ DD + + L R + S +R ++
Sbjct: 22 ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 81
Query: 367 DEVSERSGAPLRCCRRQFDNVRRVFKAVEEIPGNVVANIRST 492
DE+ E + LR C + + RV+ +E +A +R T
Sbjct: 82 DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 120
>Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical
protein F39D8.2a protein.
Length = 281
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +1
Query: 196 ALLERLLTVPSKLSEQMIFQIDEPTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 366
AL E++ + P +++ + E K ++ DD + + L R + S +R ++
Sbjct: 62 ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 121
Query: 367 DEVSERSGAPLRCCRRQFDNVRRVFKAVEEIPGNVVANIRST 492
DE+ E + LR C + + RV+ +E +A +R T
Sbjct: 122 DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 160
>DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor
PSA-3 splice variantbeta protein.
Length = 241
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +1
Query: 196 ALLERLLTVPSKLSEQMIFQIDEPTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 366
AL E++ + P +++ + E K ++ DD + + L R + S +R ++
Sbjct: 22 ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 81
Query: 367 DEVSERSGAPLRCCRRQFDNVRRVFKAVEEIPGNVVANIRST 492
DE+ E + LR C + + RV+ +E +A +R T
Sbjct: 82 DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 120
>AL132841-6|CAB60331.2| 494|Caenorhabditis elegans Hypothetical
protein Y15E3A.3 protein.
Length = 494
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 470 TFPGISSTALKTRRTLSNCRLQQRRGAPDLSDTSSKSFLCLEDSF 336
+FP I TA + + L + L Q D+SD + K++L L D F
Sbjct: 302 SFPDIEITAARLEKALCHISLLQFLYKEDISDWTRKTYLYLLDLF 346
>AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear receptor
NHR-115 protein.
Length = 391
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = -1
Query: 444 FENATDVVELSPTATERS---TRSLRHLVQVFSMSRRQFSAEKLSDDS 310
F+ TD+++++ +RS TR R L +VF +S+ +FS ++ DDS
Sbjct: 342 FQRLTDLMKVN-NLIQRSIWETRPHRELGRVFEISKLEFSHPEMFDDS 388
>AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 115 protein.
Length = 391
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = -1
Query: 444 FENATDVVELSPTATERS---TRSLRHLVQVFSMSRRQFSAEKLSDDS 310
F+ TD+++++ +RS TR R L +VF +S+ +FS ++ DDS
Sbjct: 342 FQRLTDLMKVN-NLIQRSIWETRPHRELGRVFEISKLEFSHPEMFDDS 388
>AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical
protein T27B7.3 protein.
Length = 387
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = -1
Query: 444 FENATDVVELSPTATERS---TRSLRHLVQVFSMSRRQFSAEKLSDDS 310
F+ TD+++++ +RS TRS R L +VF++ + QFS + +DS
Sbjct: 338 FQRLTDLMKVN-NLIQRSIWETRSRRELGRVFNILKVQFSHPDMLEDS 384
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,741
Number of Sequences: 27780
Number of extensions: 261985
Number of successful extensions: 771
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -