Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N12
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 191 2e-49
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 176 7e-45
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 1.2
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 1.6
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 1.6
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 2.1
06_01_0913 - 7042230-7043332,7043420-7043621 28 4.7
05_07_0165 + 28107093-28108457 28 4.7
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515... 28 4.7
09_03_0103 - 12383585-12384700 27 6.3
01_01_1134 + 8994315-8995892 27 6.3
08_01_0342 - 3016705-3016884,3016963-3017031,3017322-3017408,301... 27 8.3
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 27 8.3
05_05_0226 + 23442971-23443857,23444209-23446324 27 8.3
02_04_0094 + 19664434-19665078 27 8.3
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 191 bits (466), Expect = 2e-49
Identities = 99/173 (57%), Positives = 122/173 (70%), Gaps = 9/173 (5%)
Frame = +3
Query: 3 TRGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWGSECS 179
T GK+ RKKRKYELGR ANTKL + + VR RGGN K+RALRLDTGN++WGSE
Sbjct: 14 TGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAV 73
Query: 180 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKK------- 338
TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK
Sbjct: 74 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKK 133
Query: 339 -GAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 494
A+ E E A K+S +K RQ+ ++ +EEQF +GRLLAC++S
Sbjct: 134 DAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACISS 186
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 176 bits (429), Expect = 7e-45
Identities = 99/190 (52%), Positives = 122/190 (64%), Gaps = 26/190 (13%)
Frame = +3
Query: 3 TRGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWGSECS 179
T GK+ RKKRKYELGR ANTKL + + VR RGGN K+RALRLDTGN++WGSE
Sbjct: 14 TGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAV 73
Query: 180 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGA----- 344
TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 74 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKK 133
Query: 345 --------------------KLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFH 464
K +AE K+S +K RQ+ ++ +EEQF
Sbjct: 134 DAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFG 193
Query: 465 TGRLLACVAS 494
+GRLLAC++S
Sbjct: 194 SGRLLACISS 203
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 36 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 170
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 434 GRGWSGGAIPHWTAVS 481
G GW GG+ HW++VS
Sbjct: 65 GNGWQGGSTDHWSSVS 80
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 187 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 68
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 90 IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 269
+H + + GG T R +R C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 270 V 272
V
Sbjct: 436 V 436
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 151 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 41
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>05_07_0165 + 28107093-28108457
Length = 454
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 465 CGIAPPDHPLPWTGAACS 412
C +PPD+ LPW AA S
Sbjct: 248 CTYSPPDYGLPWADAAVS 265
>01_02_0122 +
11348686-11348948,11350492-11350587,11351513-11351524,
11354009-11354699
Length = 353
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 374 KQKTQSKDSEEVPEQAAPVQGRGWSGGAIPHWTAVS 481
K +T+ KD PE A G G GG I + +A S
Sbjct: 192 KTRTKEKDKAPAPEAAHNDDGGGGGGGGIDNVSAAS 227
>09_03_0103 - 12383585-12384700
Length = 371
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -1
Query: 374 YDGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTHQFIVRGIINNIN 198
+D F E+ T W+Q+ +F P G+H + ++ Y ++I IN +N
Sbjct: 173 FDSFNVCCEIFTIGDKSWRQIGSFHGAPTDRGVHVNGAVYY--LTKFRYIASSRINCLN 229
>01_01_1134 + 8994315-8995892
Length = 525
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 150 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 293
G F+ C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>08_01_0342 -
3016705-3016884,3016963-3017031,3017322-3017408,
3017603-3017650,3017783-3017873,3018243-3018322,
3018429-3018533,3019457-3019551,3019710-3019788,
3020214-3020402
Length = 340
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -1
Query: 413 QVLLRC----LLTAFFVYDGFLSLSELGTFLPSEWQQVVAFIPL 294
Q+LL C LL F Y GFL L T + EWQ VV + L
Sbjct: 246 QLLLLCPVLFLLQGFEGYVGFLLLRTAHTGIVPEWQVVVCGVLL 289
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 166 PHAKFPVSRRRARYLVLPPRDLTKWMRWGP 77
P +RRR R+ + PPR +RW P
Sbjct: 18 PSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 363 EAIINKKRSQK-TAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 494
E ++NK SQ AK RL FH+G L CVAS
Sbjct: 521 EFLLNKSLSQIFIAKSSRDHPRLGVNTNACHLSFHSGELTECVAS 565
>02_04_0094 + 19664434-19665078
Length = 214
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 266 CRGGCHTFQAVV*KPLPAATRKEER 340
C GG T +AVV LPAA RK R
Sbjct: 107 CAGGGGTAKAVVIAGLPAAARKASR 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,741
Number of Sequences: 37544
Number of extensions: 376068
Number of successful extensions: 1120
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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