Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N12
         (494 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   270   2e-72
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   270   2e-72
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   270   2e-72
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   270   2e-72
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...   211   1e-54
BC005678-1|AAH05678.1|   80|Homo sapiens Similar to ribosomal pr...    60   5e-09

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  270 bits (662), Expect = 2e-72
 Identities = 125/164 (76%), Positives = 140/164 (85%)
 Frame = +3

Query: 3   TRGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECST 182
           T GKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD GNF+WGSEC T
Sbjct: 14  TGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCT 73

Query: 183 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAE 362
           RKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  E
Sbjct: 74  RKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEE 133

Query: 363 EAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 494
           E I+NKKRS+K  KKY  R++ +K+   LEEQF  G+LLAC+AS
Sbjct: 134 EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  270 bits (662), Expect = 2e-72
 Identities = 125/164 (76%), Positives = 140/164 (85%)
 Frame = +3

Query: 3   TRGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECST 182
           T GKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD GNF+WGSEC T
Sbjct: 14  TGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCT 73

Query: 183 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAE 362
           RKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  E
Sbjct: 74  RKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEE 133

Query: 363 EAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 494
           E I+NKKRS+K  KKY  R++ +K+   LEEQF  G+LLAC+AS
Sbjct: 134 EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  270 bits (662), Expect = 2e-72
 Identities = 125/164 (76%), Positives = 140/164 (85%)
 Frame = +3

Query: 3   TRGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECST 182
           T GKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD GNF+WGSEC T
Sbjct: 14  TGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCT 73

Query: 183 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAE 362
           RKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  E
Sbjct: 74  RKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEE 133

Query: 363 EAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 494
           E I+NKKRS+K  KKY  R++ +K+   LEEQF  G+LLAC+AS
Sbjct: 134 EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  270 bits (662), Expect = 2e-72
 Identities = 125/164 (76%), Positives = 140/164 (85%)
 Frame = +3

Query: 3   TRGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECST 182
           T GKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD GNF+WGSEC T
Sbjct: 14  TGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCT 73

Query: 183 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAE 362
           RKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  E
Sbjct: 74  RKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEE 133

Query: 363 EAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 494
           E I+NKKRS+K  KKY  R++ +K+   LEEQF  G+LLAC+AS
Sbjct: 134 EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 177


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score =  211 bits (515), Expect = 1e-54
 Identities = 109/164 (66%), Positives = 123/164 (75%)
 Frame = +3

Query: 3   TRGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECST 182
           T GKR P  KKRKYELGRPAANTK+GP+RIH VR RGG                   C T
Sbjct: 14  TGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------------------C-T 53

Query: 183 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAE 362
           RKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT  E
Sbjct: 54  RKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEE 113

Query: 363 EAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 494
           E I+NKKRS+K  KKY  R++ +K+   LEEQF  G+LLAC+AS
Sbjct: 114 EEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 157


>BC005678-1|AAH05678.1|   80|Homo sapiens Similar to ribosomal
           protein S8 protein.
          Length = 80

 Score = 59.7 bits (138), Expect = 5e-09
 Identities = 28/49 (57%), Positives = 36/49 (73%)
 Frame = +3

Query: 348 LTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVAS 494
           LT  EE I+NKKRS+K  KKY  R++ +K+   LEEQF  G+LLAC+AS
Sbjct: 1   LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIAS 49


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,705,116
Number of Sequences: 237096
Number of extensions: 2069319
Number of successful extensions: 4529
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4529
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)