Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N11
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 228 5e-61
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 134 6e-33
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 128 4e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 85 9e-18
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.5
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.3
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.4
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 5.8
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.7
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 7.7
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 25 7.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 228 bits (557), Expect = 5e-61
Identities = 104/142 (73%), Positives = 122/142 (85%)
Frame = +2
Query: 2 HEATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRF 181
+ ATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT RF
Sbjct: 183 YNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRF 242
Query: 182 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAA 361
PG+LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS ++A++VPELTQQMFDA NMM A
Sbjct: 243 PGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVA 302
Query: 362 CDPRHGRYLTVAAIFRGRMSMK 427
DPRHGRYLTVAA+FRG++SMK
Sbjct: 303 ADPRHGRYLTVAALFRGKVSMK 324
Score = 66.5 bits (155), Expect = 3e-12
Identities = 28/45 (62%), Positives = 36/45 (80%)
Frame = +3
Query: 429 EVDEQMLNIQNKNSSSFVEWIPNNVKTXVCDIPSRGLKMAATFIG 563
EVDEQ+ ++Q KNS+ FVEWIP+NV VC +P + LKM+ATFIG
Sbjct: 325 EVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIG 369
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 134 bits (325), Expect = 6e-33
Identities = 56/137 (40%), Positives = 86/137 (62%)
Frame = +2
Query: 2 HEATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRF 181
+ + L+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++ +S +T LRF
Sbjct: 189 YNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRF 248
Query: 182 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAA 361
G LN DL + N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N M
Sbjct: 249 AGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVK 308
Query: 362 CDPRHGRYLTVAAIFRG 412
CDPR GRY+ ++RG
Sbjct: 309 CDPRTGRYMATCLLYRG 325
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 429 EVDEQMLNIQNKNSSSFVEWIPNNVKTXVCDIP 527
+V + +I+++ + FV+W P K +C P
Sbjct: 331 DVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEP 363
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 128 bits (310), Expect = 4e-31
Identities = 54/137 (39%), Positives = 84/137 (61%)
Frame = +2
Query: 2 HEATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRF 181
+ + L+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF
Sbjct: 185 YNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRF 244
Query: 182 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAA 361
G LN DL + N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N M
Sbjct: 245 EGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVK 304
Query: 362 CDPRHGRYLTVAAIFRG 412
CDPR GRY+ ++RG
Sbjct: 305 CDPRAGRYMATCLLYRG 321
Score = 30.3 bits (65), Expect = 0.20
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 429 EVDEQMLNIQNKNSSSFVEWIPNNVKTXVCDIPSRGLK 542
+V + I+ K + FV+W P K +CD P + ++
Sbjct: 327 DVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIE 364
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 84.6 bits (200), Expect = 9e-18
Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Frame = +2
Query: 2 HEATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRF 181
+ + L++ +L N D +DN AL I L PT+ N LVS MS TT LR+
Sbjct: 186 YNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRY 245
Query: 182 PGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL---TVPELTQQMFDAKNM 352
PG +N DL + +++P PR HF + + P T++ ++ +A+ TV ++ +++ KN
Sbjct: 246 PGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQ 305
Query: 353 MAACDP-RHGRYLTVAAIFRG 412
M + +P + ++++ I +G
Sbjct: 306 MVSVNPSKKSCFISILDIIQG 326
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 2.5
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 26 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 205
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 206 RKLAVNMV 229
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 104 VSACGSRCHRGLHC 63
VSAC CH+GL C
Sbjct: 210 VSACAFACHKGLSC 223
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 104 VSACGSRCHRGLHC 63
VSAC CH+GL C
Sbjct: 207 VSACAFSCHKGLGC 220
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 450 NIQNKNSSSFVEWIPNNVKTXV 515
+ + +S+S + WIP N KT +
Sbjct: 6 SFSSTSSASSINWIPKNTKTSI 27
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 7.7
Identities = 22/70 (31%), Positives = 26/70 (37%)
Frame = -2
Query: 544 IFSPRDGMSHTXVFTLFGIHSTKDDEFLF*MLSICSSTSLHRHTTTEDGCDGEVTAVTRV 365
+FS G HT TL T D FL S +RH T E C G + V
Sbjct: 47 VFSALLGYDHTLWNTLLPERPTIDASFLLRRAQGHSEGDEYRHGTCESKC-GHIFRKGEV 105
Query: 364 TRRHHVLSVE 335
R SV+
Sbjct: 106 FYRCKTCSVD 115
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 41 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 145
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 435 DEQMLNIQNKNSSSFVEWIPNNVKTXVCDIPSRGLKMAATFI 560
+ ++NI+ N S W+PN + +P G K++ I
Sbjct: 354 ENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLI 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,114
Number of Sequences: 5004
Number of extensions: 46351
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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