Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N11
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = -2

Query: 268  SETGH--EEMQTWEWHH---VHCQLAEIRIQLT 185
            SE+G    EM TW +HH    HC +   +++ T
Sbjct: 1665 SESGRLDTEMSTWGYHHNVNKHCTIHRTQVKET 1697


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 274 EGSETGHEEMQTWEWHHVHCQLAEIRIQLTREPETGGNARHG 149
           +GS T H E++     H+   L ++++ +   PET  +   G
Sbjct: 47  QGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRHTTLG 88


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 367 PASRPLPHRRSHLPWSYVYEVKSMSRCL 450
           P  +  P R  H PW+    V+  ++C+
Sbjct: 451 PVLKNFPTRYIHEPWNAPLNVQRAAKCI 478


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 HVPRQSAVPRAHRPRAHT 327
           H P+Q+   + H P+AH+
Sbjct: 283 HAPKQTVRFKVHDPKAHS 300


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 272 GERNRA*RNADVGMAPCSLPACGDPHSTDQGT 177
           G   R   +  +G+  C L  CG  + T + T
Sbjct: 97  GTHGRQCNDTSIGVDGCDLMCCGRGYKTQEVT 128


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 235  PTSAFLHARFRSPHVPRQS 291
            PT+A  H+R  S  +PRQ+
Sbjct: 1766 PTNASAHSRSGSQSMPRQN 1784


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 272 GERNRA*RNADVGMAPCSLPACGDPHSTDQGT 177
           G   R   +  +G+  C L  CG  + T + T
Sbjct: 98  GTHGRQCNDTSIGVDGCDLMCCGRGYKTQEVT 129


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 385 PHRRSHLPWSYVYEVKSM 438
           PH++    W++VYE K +
Sbjct: 619 PHQQHLDQWNWVYEWKEL 636


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 257 PGFAPLTSRGSQQYRALTVPELTQQ 331
           PG  P   + +QQ++ +    L+QQ
Sbjct: 219 PGMHPRQQQQAQQHQGVVTSPLSQQ 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,016
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)