Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N10
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 29 0.32
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.3
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 27 2.3
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 3.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 5.2
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac... 25 6.9
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 6.9
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 25 9.1
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 9.1
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 9.1
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 29.5 bits (63), Expect = 0.32
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +2
Query: 44 KSDDVLQRNSAHLNTVLETLDIQQHS----LGVLAVLVSKFSLLQTSGDADKSTMFQQIH 211
+++D+L L ++L++LD Q LGV V S+ ++ +S++ Q+I
Sbjct: 215 EANDLLNEQRNALQSLLDSLDDQIEPDVSYLGVPLAAVLPSSITSSAKSNSRSSLSQKIR 274
Query: 212 DFISNCNGEQVRLSPELYA-ELCHILTNHLVEIKQPIRGIEILKRA 346
++ISN + + + A L I + E QP I +L A
Sbjct: 275 NYISNMLFDAISYTDSCLAIHLPFIPESTTREDNQPFSEIRLLSPA 320
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 507 CFESLLPPSSAPIPVTSVFKNSKAGFI 427
C LPP IP S F+N+ GF+
Sbjct: 524 CLIDKLPPKKVDIPFKSDFENALNGFV 550
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 278 HILTNHLVEIKQPIRGIEILKRAIRKIQLFDS 373
+++ +HL+ I IRG E + I+ IQL+++
Sbjct: 226 NVVDDHLMHITHVIRGEEWVPSTIKHIQLYEA 257
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 3.0
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 218 ISNCNGEQVRLSPELYAELCHILTNHLVEIKQPIRGIEILKRAIRKIQLFDSQ-LTSIHA 394
I+N NG + ++Y +L +T + E K + G E +K+ I ++Q +D + L I A
Sbjct: 113 ITNGNGNTIFPEVDMYLQLLLSMTLYYNE-KYEV-GAEYIKKVIARLQSYDRRTLDQIAA 170
Query: 395 DL--CQLCLLSKCMKPALEFLNT 457
L + KC + ++E NT
Sbjct: 171 KLYFYYILFFEKCNR-SVECRNT 192
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 498 SLLPPSSAPIPVTSVFKNSKAG 433
S PP++API + V KN AG
Sbjct: 562 SASPPANAPIVSSDVHKNENAG 583
>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 136
Score = 25.0 bits (52), Expect = 6.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 140 LVSKFSLLQTSGDADKSTM---FQQIHDFISNCNGEQVRLSPELYAELCHILT 289
LV + + L +S D T+ FQ I D N ++ ++PE+Y CH ++
Sbjct: 10 LVQRTNTLNSSIDNATLTILSRFQDILDIAINEGKDKYTVAPEVYQIECHTVS 62
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 6.9
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +2
Query: 230 NGEQVRLSPELYAELCHILT 289
NG++ ++ E+Y + CH++T
Sbjct: 409 NGKRTKVRLEMYDDCCHVVT 428
>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 413 LLSKCMKPALEFLNTDVTGIGAELGGNNDSKHFLL 517
LLS + P ++ L+ G+ + GG + K F++
Sbjct: 158 LLSSLIYPGMQALDEQYLGVDVQFGGVDQRKIFVM 192
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 254 PELYAELCHILTNHLVEIKQPIRGIEILKRAIRKIQLFDSQLTSIHADLC 403
P + + L + LV ++ P+R I+ L + +R +++ S LC
Sbjct: 625 PNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSAQSPSLFLC 674
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 221 SNCNGEQVRLSPELYAELCHILTNHLVEIKQP--IRGIEILKRAIRKIQLFDSQLTSI 388
+N +QVR SP LTN +V +++P + EI K+ ++ L + S+
Sbjct: 638 NNIFADQVRQSPTSMIRTASGLTNRIVSVEKPASVMNPEIDKQIQDQVALATNSAMSV 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,668
Number of Sequences: 5004
Number of extensions: 42789
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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