Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N10
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104...    93   9e-20
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    28   5.3  
08_02_0783 - 21166491-21166892,21167139-21167251,21168127-211682...    27   7.0  
08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936...    27   9.2  
06_01_0258 - 1913408-1913506,1913593-1913631,1913720-1913859,191...    27   9.2  

>08_01_0130 +
           1040696-1041049,1042135-1042275,1042422-1042673,
           1043797-1043904,1044289-1044593,1044720-1044841,
           1044979-1045225,1045308-1045365,1045414-1045530,
           1045718-1045753,1046492-1046554,1046958-1047047,
           1047241-1047399,1047475-1047596,1048145-1048217,
           1048307-1048375
          Length = 771

 Score = 93.5 bits (222), Expect = 9e-20
 Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
 Frame = +2

Query: 26  LCEIISKSD-DVLQRNSAHLNTVLETLDIQQHSLGVLAVL---VSKFSLLQTSGDADKST 193
           L  ++ ++D + L+ +SA L   L  L    HSLG L +L    S  S L+  G  D   
Sbjct: 348 LHNLLRQADGEPLRAHSAALLPFLAQLHPSAHSLGFLYLLEAFASSASNLRAQGGGD--- 404

Query: 194 MFQQIHDFISNCNGEQVRLSPELYAELCHILTNHLVEIKQPIRGIEILKRAIRKIQLFDS 373
                 DF+ +C+ EQ+RL+P+ +  +C +  N ++++  PIRGI  L+ AIRKIQ    
Sbjct: 405 FLVTTADFLVSCSAEQIRLAPDKFLSVCRVFKNEVMQLNAPIRGIAPLRAAIRKIQTSSE 464

Query: 374 QLTSIHADLCQLCLLSKCMKPALEFLNTDV 463
           +LT IHAD   LCLL+K  K  L  L  D+
Sbjct: 465 ELTPIHADYLLLCLLAKQYKAGLSVLEDDI 494


>01_01_1098 -
           8691312-8692430,8692640-8693509,8694522-8696105,
           8696199-8696258,8696336-8696414,8696494-8696555,
           8697129-8697204,8697367-8697419,8698181-8698270,
           8698411-8698458
          Length = 1346

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 198 NMVDLSASPLVCSRENLETSTASTP 124
           NMVDLSA+P +  R   + S  STP
Sbjct: 274 NMVDLSATPYLVERNGDKPSRQSTP 298


>08_02_0783 -
           21166491-21166892,21167139-21167251,21168127-21168208,
           21168298-21168416,21168471-21168528,21168954-21169016,
           21169641-21169850,21171549-21171731
          Length = 409

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 119 SLGVLAVLVSKFSLLQTSGDADKSTMFQQIHDFISNCNGEQVR 247
           S+ V+ ++ S F  +      +K+  FQ +H+ IS+C     R
Sbjct: 125 SIDVIHLVFSAFGFVHKIATFEKAAGFQGLHESISSCESNSNR 167


>08_02_0274 -
           15192670-15192983,15193110-15193200,15193295-15193603,
           15193859-15193944,15196034-15196088,15196689-15196757,
           15197027-15197074,15198090-15198203,15198464-15198526,
           15199236-15199427,15199519-15199643,15199723-15199779,
           15200209-15200332,15200478-15200543,15200656-15200738,
           15200916-15201036,15201663-15201773,15201841-15201936,
           15202032-15202107,15202878-15203016,15203283-15203346,
           15203454-15203527,15203845-15203923,15204473-15204547
          Length = 876

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 425 CMKPALEFLNTDVTGIGAELGGNNDSKH 508
           C+K   E+ ++        LGGNND +H
Sbjct: 428 CIKDPREYFDSQQANALRSLGGNNDGRH 455


>06_01_0258 -
           1913408-1913506,1913593-1913631,1913720-1913859,
           1914148-1914154,1914270-1914440,1914541-1914712,
           1915367-1915741,1915892-1915910,1916508-1916581,
           1916744-1916937
          Length = 429

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 183 SASPLVCSRENLETSTASTPNECC*ISSVSNTV 85
           S+SPL    ++ ET   STP++CC  SS  +++
Sbjct: 137 SSSPLTVQHDDTET---STPSQCCLWSSPGSSI 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,094,283
Number of Sequences: 37544
Number of extensions: 244376
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)