Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N09
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    69   4e-13
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.63 
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    26   4.4  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   7.7  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   7.7  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   7.7  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 29/48 (60%), Positives = 36/48 (75%)
 Frame = +3

Query: 423 YADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWG 566
           Y  KK+ KP  + KS + LDVKPWDDET M E+E  VR+I+MDGL+WG
Sbjct: 115 YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWG 162



 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = +2

Query: 56  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYQ 226
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY+
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYK 58


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 549 PFQLCALGFPFLSYLSHHPMVL--HQGL*RTLQ 457
           P+QL  L + +L + +HHP +L    GL +T+Q
Sbjct: 558 PYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQ 590


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 155 DIKVFEQVGKVPAASLPHVLRWYQPHRIVHPC*TQNL 265
           D + +E V K P  S  H+++W++P  ++  C T +L
Sbjct: 230 DDESYESVFK-PVIS--HIMQWFRPEAVILQCGTDSL 263


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 429 DKKSKKPALIAKSSIILDVKPWDDETDMKEME 524
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 58  HFSIRNLIYSSKPHGP 11
           H  I +L+Y + PHGP
Sbjct: 262 HHKIEDLVYHAYPHGP 277


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 182 KVPAASLPHVLRWYQ 226
           K P A +PHV +W+Q
Sbjct: 770 KQPVAFIPHVAQWFQ 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,973
Number of Sequences: 5004
Number of extensions: 36173
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)