Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N09
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    68   6e-12
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    66   2e-11
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    66   2e-11
08_02_0829 - 21604845-21605588                                         27   7.9  
08_02_0695 + 20122838-20122949,20123238-20123335,20123520-201236...    27   7.9  

>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +3

Query: 426 ADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWG 566
           A K S K     KSS++LDVKPWDDETDMK++E  VR+++M+GL WG
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWG 169



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 25/52 (48%), Positives = 32/52 (61%)
 Frame = +2

Query: 68  DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWY 223
           D+ TA GL  L Q+L+ ++YVSG   S+ DIKVF  V   P A  P+  RWY
Sbjct: 7   DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWY 58


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/50 (58%), Positives = 37/50 (74%)
 Frame = +3

Query: 417 KAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWG 566
           +A A K S K     KSS++LDVKPWDDETDM ++E  VR ++M+GLLWG
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWG 174



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +2

Query: 68  DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWY 223
           +V +  GL +L++YL  RSY+SGY  S  D+ V+      P++S  +V RW+
Sbjct: 7   NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWF 58


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/50 (58%), Positives = 37/50 (74%)
 Frame = +3

Query: 417 KAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWG 566
           +A A K S K     KSS++LDVKPWDDETDM ++E  VR ++M+GLLWG
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWG 190



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/56 (44%), Positives = 36/56 (64%)
 Frame = +2

Query: 56  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWY 223
           + L +V +  GL +L++YL  RSY+SGY  S+ D+ VF  +   PAAS  +V RWY
Sbjct: 22  ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWY 77


>08_02_0829 - 21604845-21605588
          Length = 247

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 199 PTSCFEVVPATSHRTPLLNAKPGQRE 276
           PT C  ++PA+    P  N KPG+ +
Sbjct: 35  PTPCLIILPASFRAPPASNPKPGRAD 60


>08_02_0695 +
           20122838-20122949,20123238-20123335,20123520-20123696,
           20123790-20123890,20124049-20124124,20124213-20124272,
           20124362-20124546,20124638-20124734,20124817-20124903,
           20124989-20125047,20125157-20125248,20125436-20125513,
           20125617-20125777,20125880-20126098
          Length = 533

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 104 QYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHV 211
           QY  E + V+GY P     + F  +  VP AS P V
Sbjct: 441 QYFNEYTSVAGYGPVHTGARWFNDMINVPFASKPFV 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,024
Number of Sequences: 37544
Number of extensions: 244393
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)