Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N09
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...    95   2e-20
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...    82   2e-16
Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p4...    29   3.1  
Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    27   9.4  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 52/114 (45%), Positives = 62/114 (54%)
 Frame = +3

Query: 225 SHIASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXX 404
           +++ASYT AERKTW+                            LFGS             
Sbjct: 57  ANVASYTDAERKTWASAGGSAPAAAAADGDDFD----------LFGSDDEEEDAEKAKIV 106

Query: 405 XXXLKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWG 566
              L AYA+KK+KK   IAKSS+ILDVKPWDDETD+ EME  VR+IEMDGL+WG
Sbjct: 107 EERLAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWG 160



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +2

Query: 62  LGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWY 223
           + DVK+  GL   N  LAE+++ +G+  S  D ++F  +G  P A++ P+V RWY
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWY 56


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 41/71 (57%), Positives = 46/71 (64%)
 Frame = +3

Query: 354 LFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQV 533
           LFGS                L AYA KK+ K   IAKSS+ILDVKPWDDETD+ EME  V
Sbjct: 140 LFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKLV 199

Query: 534 RTIEMDGLLWG 566
           R+IEMDGL+WG
Sbjct: 200 RSIEMDGLVWG 210


>Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical
           protein C36A4.6 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 86  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 193
           G+N+LNQ L + +Y +G+  +++ I      GK+ A
Sbjct: 117 GMNQLNQSLLQNTYATGWKHTRSAIAPIFSTGKMKA 152


>AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p450
           family protein 25A5 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 86  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 193
           G+N+LNQ L + +Y +G+  +++ +      GK+ A
Sbjct: 93  GMNQLNQSLLQNTYATGWKHTRSAVAPIFSTGKMKA 128


>Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical
           protein F34D10.3 protein.
          Length = 147

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 464 LCNKSGFLRLFVSICLKTFFTDSGCFCILF 375
           L N SG  + ++ +CL  F TD+ CF +LF
Sbjct: 27  LDNSSGD-KQYIFLCLIVFATDAACFGVLF 55


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 53  KMALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYQPH 232
           +M+  D K  + LN L Q L+E    + Y PS   ++   +       S+P  L++ +PH
Sbjct: 32  EMSEEDQKLEEDLNLLVQRLSEPD-TTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPH 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,742,876
Number of Sequences: 27780
Number of extensions: 209396
Number of successful extensions: 529
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)