Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N08
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    47   2e-06
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    28   1.0  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    26   3.1  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.1  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   7.2  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   9.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   9.5  

>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
 Frame = +2

Query: 182 QQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASLQAGWLRR 361
           Q  L   P   + + W +A A+ P  ++ +PV  +GF +++ R   Q +Q +     +R 
Sbjct: 188 QAALYVKPPNYNQQKWDEAVANRPS-NSVVPVLAVGFPDVQKRINMQIQQVNTYRIRMRE 246

Query: 362 AGETLGEXXXXXXXXXXXXXXXXXXMHA-LKHTLLQVIARQEVVGRVGAALTPDEEVTRT 538
             ETLG                    H  L   +L++  +  V+   G AL P+EE  R 
Sbjct: 247 IVETLGRLSNKHDLDFSIKLAEAKNRHVRLSERILRLAIKVHVLRHRGYALKPNEEELRK 306

Query: 539 RL 544
           +L
Sbjct: 307 KL 308


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 182 EAFEVRVK*PESQWSIRCQSVLFSLHRRLEKQLIPKRIYGFHSLPYRPRILPPGFYS 12
           + F+++++  ES W +R Q +   L  +  K  + K+     SL   PR+  P  +S
Sbjct: 196 DRFKIKLETEESNWKVRLQVLESKLATQDRKLRMQKKSTERKSLLVSPRVSSPKLFS 252


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 431 QLAWQAALRRPPDASSPHLT 372
           Q  W    R PP   SPHLT
Sbjct: 427 QTGWTERFRLPPSRHSPHLT 446


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 176 MLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPI 283
           +L+Q   TP AG  +    Q Q   P P   +P PI
Sbjct: 331 LLRQTTTTPFAGNQVMPTPQVQGSRPPPPPPMPAPI 366


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 156 SLHPHLKCFSNTSKHHQQVWICDCGNKHKPTIPIQIITYQY 278
           SL P    F++ S        C   N HK  I I+ I++QY
Sbjct: 202 SLIPFFDIFNHKSGPAIASLHCQESNDHKGDIKIEFISFQY 242


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 540 RVLVTSSSGVKAAPTRPTTS 481
           RVL T+SSGV+  P  P T+
Sbjct: 469 RVLATNSSGVRGFPYIPDTN 488


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 134 RCQSVLFSLHRRLEKQLIP 78
           R QS++F L+++ EK+ IP
Sbjct: 103 RIQSIIFELNQQCEKESIP 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,891
Number of Sequences: 5004
Number of extensions: 38274
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)