Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N08
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1536 - 27537394-27537576,27537837-27538073,27538164-275390...    30   1.0  
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    29   2.4  
10_07_0148 + 13413078-13414295                                         28   4.2  
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460...    28   4.2  
07_03_0145 - 14376610-14377992                                         28   5.5  
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727...    27   7.3  
05_01_0127 - 863755-865182                                             27   9.7  
05_01_0124 + 852358-853257                                             27   9.7  

>07_03_1536 -
           27537394-27537576,27537837-27538073,27538164-27539078,
           27540028-27540282,27540872-27540940,27542743-27542805,
           27542833-27542901,27542962-27542997
          Length = 608

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 521 HRGSKLHQHDRRLLDE-RSPVEGCVLVRASSQLAWQAALRRPPDA 390
           H  S+  Q +R LL E   PVEG V +      AWQ A+R  P A
Sbjct: 209 HPRSRNAQRERSLLREWLPPVEGAVALSIVLAFAWQKAVRAWPRA 253


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 378 PNVSPARRNQPAWRLACSAWHCALNFISEKPII 280
           P  SP R   P   + C++W  A++ ISEK +I
Sbjct: 621 PPYSPGRVGAPLVFVICNSWSQAMDRISEKEVI 653


>10_07_0148 + 13413078-13414295
          Length = 405

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -3

Query: 500 QHDRRLLDERSPVEGCVLVRASSQLAWQAALRRPPDASSPHLTSRRRDATS 348
           QH R+       + GCV  RA    A  A  R PP   +P   +RRR   S
Sbjct: 347 QHRRQADRPVGLLAGCVSHRAVDVSAVAAVCRPPPPPGAPATATRRRSDLS 397


>04_04_0799 +
           28143878-28145042,28145127-28145290,28146008-28146070,
           28146268-28146491,28146850-28147555
          Length = 773

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 378 PNVSPARRNQPAWRLACSAWHCALNFISEKPII 280
           P  SP R   P   + C+ W  A++ ISEK ++
Sbjct: 625 PPYSPGRIGAPLVFIICNRWSQAMDQISEKDVV 657


>07_03_0145 - 14376610-14377992
          Length = 460

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 137 CSTVTPVTSPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYI 271
           C T++ ++ P   ++   L      +D + WK     +P P N I
Sbjct: 27  CETISVISMPKTGIVSDSLPVSSIDVDKKKWKSVIIGDPRPKNRI 71


>02_02_0155 +
           7272563-7272630,7272934-7273031,7273491-7274057,
           7275121-7276085,7276201-7276388,7276497-7276938
          Length = 775

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 521 HRGSKLHQHDRRLLDERSPVEGCVLVRASSQLAWQAALRRPPD 393
           HRGS L    R LL+E         +    QLAW+ + R   D
Sbjct: 421 HRGSALSMRRRSLLEEGGEAVSSTGIGGGWQLAWKWSEREGED 463


>05_01_0127 - 863755-865182
          Length = 475

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 155 PESQWSIRCQSVLFSLHRRLEKQLIPKRI 69
           P   WS+RC   L  L R +  +L+ +R+
Sbjct: 330 PSPSWSVRCSIYLNRLPREVSDELMEERV 358


>05_01_0124 + 852358-853257
          Length = 299

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 155 PESQWSIRCQSVLFSLHRRLEKQLIPKRI 69
           P   WS+RC   L  L R +  +L+ +R+
Sbjct: 150 PSPSWSVRCSIYLNRLPREVSDELMEERV 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,950
Number of Sequences: 37544
Number of extensions: 293761
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)