Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N08
(544 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein... 103 3e-22
AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa varia... 100 7e-21
AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa varia... 100 7e-21
AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens ... 100 7e-21
BX538002-1|CAD97957.1| 291|Homo sapiens hypothetical protein pr... 79 1e-14
AL137650-1|CAB70859.1| 144|Homo sapiens hypothetical protein pr... 36 0.092
BC024300-1|AAH24300.1| 605|Homo sapiens FSTL4 protein protein. 29 8.0
AB028984-1|BAA83013.1| 693|Homo sapiens KIAA1061 protein protein. 29 8.0
>AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein
protein.
Length = 505
Score = 103 bits (248), Expect = 3e-22
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 2/180 (1%)
Frame = +2
Query: 11 ESKSQVVIYVVDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQ 184
+ +++VVIYVV++ NGT + A+ L A LN ++T T SP ++
Sbjct: 234 DDQTEVVIYVVERSPNGTSRRVPATTLYAHLNKPYKNTIAATGVTLSMTR-TELSPAQIK 292
Query: 185 QYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASLQAGWLRRA 364
Q LQ PPAG+D +W+QA+ DNPD + IPVP++GF E+ R + Q + L
Sbjct: 293 QLLQNPPAGVDPIIWEQAKVDNPDSEKVIPVPMVGFKELLRRLKVQDQMTKQHQTRLDII 352
Query: 365 GETLGEXXXXXXXXXXXXXXXXXXMHALKHTLLQVIARQEVVGRVGAALTPDEEVTRTRL 544
E + E + L H LQV+ +QE+ + G A+ DEE R +L
Sbjct: 353 SEDISELQTNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQL 412
>AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 507
Score = 99.5 bits (237), Expect = 7e-21
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Frame = +2
Query: 11 ESKSQVVIYVVDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQ 184
+ +++VVIYVV++ NGT + A+ L A + T SP ++
Sbjct: 235 DDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIK 294
Query: 185 QYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASLQAGWLRRA 364
Q LQ PPAG+D +W+QA+ DNPD + IPVP++GF E+ R + Q + L
Sbjct: 295 QLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDII 354
Query: 365 GETLGEXXXXXXXXXXXXXXXXXXMHALKHTLLQVIARQEVVGRVGAALTPDEEVTRTRL 544
E + E + L H LQV+ +QE+ + G A+ DEE R +L
Sbjct: 355 SEDISELQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQL 414
>AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 508
Score = 99.5 bits (237), Expect = 7e-21
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Frame = +2
Query: 11 ESKSQVVIYVVDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQ 184
+ +++VVIYVV++ NGT + A+ L A + T SP ++
Sbjct: 236 DDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIK 295
Query: 185 QYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASLQAGWLRRA 364
Q LQ PPAG+D +W+QA+ DNPD + IPVP++GF E+ R + Q + L
Sbjct: 296 QLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDII 355
Query: 365 GETLGEXXXXXXXXXXXXXXXXXXMHALKHTLLQVIARQEVVGRVGAALTPDEEVTRTRL 544
E + E + L H LQV+ +QE+ + G A+ DEE R +L
Sbjct: 356 SEDISELQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQL 415
>AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens
cDNA FLJ10655 fis, clone NT2RP2005933, weakly similar to
NUCLEOPORIN NUP57. ).
Length = 484
Score = 99.5 bits (237), Expect = 7e-21
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Frame = +2
Query: 11 ESKSQVVIYVVDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQ 184
+ +++VVIYVV++ NGT + A+ L A + T SP ++
Sbjct: 235 DDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIK 294
Query: 185 QYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASLQAGWLRRA 364
Q LQ PPAG+D +W+QA+ DNPD + IPVP++GF E+ R + Q + L
Sbjct: 295 QLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDII 354
Query: 365 GETLGEXXXXXXXXXXXXXXXXXXMHALKHTLLQVIARQEVVGRVGAALTPDEEVTRTRL 544
E + E + L H LQV+ +QE+ + G A+ DEE R +L
Sbjct: 355 SEDISELQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQL 414
>BX538002-1|CAD97957.1| 291|Homo sapiens hypothetical protein
protein.
Length = 291
Score = 78.6 bits (185), Expect = 1e-14
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Frame = +2
Query: 11 ESKSQVVIYVVDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQ 184
+ +++VVIYVV++ NGT + A+ L A + T SP ++
Sbjct: 55 DDQTEVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIK 114
Query: 185 QYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQ 322
Q LQ PPAG+D +W+QA+ DNPD + IPVP++GF E+ R + Q
Sbjct: 115 QLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 160
>AL137650-1|CAB70859.1| 144|Homo sapiens hypothetical protein
protein.
Length = 144
Score = 35.9 bits (79), Expect = 0.092
Identities = 22/88 (25%), Positives = 35/88 (39%)
Frame = +2
Query: 281 IIGFSEIKFRAQCQAEQASLQAGWLRRAGETLGEXXXXXXXXXXXXXXXXXXMHALKHTL 460
++GF E+ R + Q + L E + E + L H
Sbjct: 1 MVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQTTSVAKIAQYKRKLMDLSHRT 60
Query: 461 LQVIARQEVVGRVGAALTPDEEVTRTRL 544
LQV+ +QE+ + G A+ DEE R +L
Sbjct: 61 LQVLIKQEIQRKSGYAIQADEEQLRVQL 88
>BC024300-1|AAH24300.1| 605|Homo sapiens FSTL4 protein protein.
Length = 605
Score = 29.5 bits (63), Expect = 8.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 195 KHHQQVWICDCGNKHKPTIPIQIIT 269
K H QVW+ G+ HK +Q+IT
Sbjct: 551 KSHDQVWVLSWGDVHKSRPSLQVIT 575
>AB028984-1|BAA83013.1| 693|Homo sapiens KIAA1061 protein protein.
Length = 693
Score = 29.5 bits (63), Expect = 8.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 195 KHHQQVWICDCGNKHKPTIPIQIIT 269
K H QVW+ G+ HK +Q+IT
Sbjct: 402 KSHDQVWVLSWGDVHKSRPSLQVIT 426
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,390,306
Number of Sequences: 237096
Number of extensions: 1587518
Number of successful extensions: 3552
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3547
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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