Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N08
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 64 8e-11
Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical p... 64 8e-11
Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical p... 64 8e-11
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 33 0.10
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 33 0.10
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 33 0.10
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 32 0.31
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 32 0.31
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 30 1.2
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 6.6
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 63.7 bits (148), Expect = 8e-11
Identities = 33/132 (25%), Positives = 59/132 (44%)
Frame = +2
Query: 146 VTPVTSPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQA 325
V P S +YL+T P G+D R+W+QA +NP P+ +PVP+ G+ ++ R + Q
Sbjct: 424 VLPKVGMSKAQRDRYLETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQV 483
Query: 326 EQASLQAGWLRRAGETLGEXXXXXXXXXXXXXXXXXXMHALKHTLLQVIARQEVVGRVGA 505
++ L + G + E L + +++V+ Q +V R
Sbjct: 484 GESKLFHEAINALGNRVEEANHEHADAVVKMEIIRNRHKTLSYRIVRVMLAQWIVSRYSR 543
Query: 506 ALTPDEEVTRTR 541
+ DE+V +
Sbjct: 544 QIDTDEDVIEAK 555
>Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical
protein K07F5.13b protein.
Length = 549
Score = 63.7 bits (148), Expect = 8e-11
Identities = 33/132 (25%), Positives = 59/132 (44%)
Frame = +2
Query: 146 VTPVTSPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQA 325
V P S +YL+T P G+D R+W+QA +NP P+ +PVP+ G+ ++ R + Q
Sbjct: 334 VLPKVGMSKAQRDRYLETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQV 393
Query: 326 EQASLQAGWLRRAGETLGEXXXXXXXXXXXXXXXXXXMHALKHTLLQVIARQEVVGRVGA 505
++ L + G + E L + +++V+ Q +V R
Sbjct: 394 GESKLFHEAINALGNRVEEANHEHADAVVKMEIIRNRHKTLSYRIVRVMLAQWIVSRYSR 453
Query: 506 ALTPDEEVTRTR 541
+ DE+V +
Sbjct: 454 QIDTDEDVIEAK 465
>Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical
protein K07F5.13a protein.
Length = 612
Score = 63.7 bits (148), Expect = 8e-11
Identities = 33/132 (25%), Positives = 59/132 (44%)
Frame = +2
Query: 146 VTPVTSPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQA 325
V P S +YL+T P G+D R+W+QA +NP P+ +PVP+ G+ ++ R + Q
Sbjct: 397 VLPKVGMSKAQRDRYLETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQV 456
Query: 326 EQASLQAGWLRRAGETLGEXXXXXXXXXXXXXXXXXXMHALKHTLLQVIARQEVVGRVGA 505
++ L + G + E L + +++V+ Q +V R
Sbjct: 457 GESKLFHEAINALGNRVEEANHEHADAVVKMEIIRNRHKTLSYRIVRVMLAQWIVSRYSR 516
Query: 506 ALTPDEEVTRTR 541
+ DE+V +
Sbjct: 517 QIDTDEDVIEAK 528
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 115 NSTDWHRMLHCDSGHFTLTSNASAIPPNTTSRYGY 219
N+ DWH D H + S IPP T +YGY
Sbjct: 57 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 91
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 115 NSTDWHRMLHCDSGHFTLTSNASAIPPNTTSRYGY 219
N+ DWH D H + S IPP T +YGY
Sbjct: 989 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 1023
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 115 NSTDWHRMLHCDSGHFTLTSNASAIPPNTTSRYGY 219
N+ DWH D H + S IPP T +YGY
Sbjct: 989 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 1023
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 79 GISCFSKRRCSENSTDWHRMLHCDSGHFTLTSNASAIPPNTTSR 210
G SC + C++ ST + C G+ ++ N A+P +TT +
Sbjct: 837 GASCNANTVCTKGSTCESGLCRCQPGYIAVSGNCVALPMSTTPK 880
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 79 GISCFSKRRCSENSTDWHRMLHCDSGHFTLTSNASAIPPNTTSR 210
G SC + C++ ST + C G+ ++ N A+P +TT +
Sbjct: 934 GASCNANTVCTKGSTCESGLCRCQPGYIAVSGNCVALPMSTTPK 977
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 161 SPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIG 289
SP P + Q+ QTPP M ++ + DN +PDN + I G
Sbjct: 895 SPQPNLHLQHHQTPP--MQSQMMQPVVTDNFEPDNDQTIRING 935
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +2
Query: 152 PVTSPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFR---AQCQ 322
P P PQ Q Y+Q P + ++Q Q P P P P I F + R A C
Sbjct: 2045 PQPQPQPQPQQPYIQRPALTLP---FQQPQYPPPIPFQPRPAPFIPFQPMVQRPSPAGCC 2101
Query: 323 AEQASLQAGWL 355
Q Q G L
Sbjct: 2102 GGQLFSQQGGL 2112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,816,707
Number of Sequences: 27780
Number of extensions: 229133
Number of successful extensions: 669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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