Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N07
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 306 4e-84
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 305 1e-83
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 305 1e-83
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 305 1e-83
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 305 1e-83
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 305 1e-83
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 305 1e-83
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 305 1e-83
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 291 1e-79
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 266 7e-72
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 211 2e-55
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 188 2e-48
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 186 5e-48
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 186 5e-48
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 182 9e-47
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 173 4e-44
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 139 1e-33
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 122 2e-28
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 83 1e-16
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 50 1e-06
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 31 0.43
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 30 0.75
Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical pr... 30 0.99
AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr prote... 30 0.99
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 28 3.0
AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical ... 28 4.0
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 4.0
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 5.3
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 27 7.0
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 27 7.0
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 27 9.2
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 27 9.2
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 27 9.2
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 306 bits (752), Expect = 4e-84
Identities = 140/142 (98%), Positives = 142/142 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 410
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 411 TQIMFETFNSPAMYVAIQAVLS 476
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLS 142
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 305 bits (748), Expect = 1e-83
Identities = 139/142 (97%), Positives = 142/142 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 410
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 411 TQIMFETFNSPAMYVAIQAVLS 476
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLS 142
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 305 bits (748), Expect = 1e-83
Identities = 139/142 (97%), Positives = 142/142 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 410
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 411 TQIMFETFNSPAMYVAIQAVLS 476
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLS 142
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 305 bits (748), Expect = 1e-83
Identities = 139/142 (97%), Positives = 142/142 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 410
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 411 TQIMFETFNSPAMYVAIQAVLS 476
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLS 142
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 305 bits (748), Expect = 1e-83
Identities = 139/142 (97%), Positives = 142/142 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 410
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 411 TQIMFETFNSPAMYVAIQAVLS 476
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLS 142
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 305 bits (748), Expect = 1e-83
Identities = 138/142 (97%), Positives = 142/142 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 410
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 411 TQIMFETFNSPAMYVAIQAVLS 476
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLS 142
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 305 bits (748), Expect = 1e-83
Identities = 139/142 (97%), Positives = 142/142 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 410
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 411 TQIMFETFNSPAMYVAIQAVLS 476
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLS 142
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 305 bits (748), Expect = 1e-83
Identities = 139/142 (97%), Positives = 142/142 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 410
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 411 TQIMFETFNSPAMYVAIQAVLS 476
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLS 142
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 291 bits (715), Expect = 1e-79
Identities = 131/140 (93%), Positives = 139/140 (99%)
Frame = +3
Query: 57 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 236
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 237 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 416
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQ 121
Query: 417 IMFETFNSPAMYVAIQAVLS 476
IMFETFN+PAMYV IQAVLS
Sbjct: 122 IMFETFNTPAMYVNIQAVLS 141
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 266 bits (651), Expect = 7e-72
Identities = 121/124 (97%), Positives = 124/124 (100%)
Frame = +3
Query: 105 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 284
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 285 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 464
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 124
Query: 465 AVLS 476
AVLS
Sbjct: 125 AVLS 128
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 211 bits (516), Expect = 2e-55
Identities = 96/98 (97%), Positives = 98/98 (100%)
Frame = +3
Query: 183 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 362
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 363 LLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLS 476
LLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLS
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 98
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 188 bits (458), Expect = 2e-48
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKI 308
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 5e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKI 308
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 5e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDMEKI 308
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 182 bits (444), Expect = 9e-47
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLKYPIEHGIITNWDDM 299
SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 173 bits (422), Expect = 4e-44
Identities = 78/144 (54%), Positives = 107/144 (74%), Gaps = 4/144 (2%)
Frame = +3
Query: 57 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 227
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 228 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 404
+S RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRE 121
Query: 405 KMTQIMFETFNSPAMYVAIQAVLS 476
+ +I FETFN PA+Y+ +QAVLS
Sbjct: 122 RSAEIFFETFNVPALYIQMQAVLS 145
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 139 bits (336), Expect = 1e-33
Identities = 68/137 (49%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGIL 248
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 249 TLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMF 425
+ YP+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMF 128
Query: 426 ETFNSPAMYVAIQAVLS 476
E + ++YVA+QAVL+
Sbjct: 129 EQYGFNSIYVAVQAVLT 145
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 122 bits (293), Expect = 2e-28
Identities = 65/155 (41%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
Frame = +3
Query: 51 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 194
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 195 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 371
D ++GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H LLT
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLT 120
Query: 372 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLS 476
E PLN NRE +IMFE+FN P +Y+A+QAVL+
Sbjct: 121 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLA 155
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 82.6 bits (195), Expect = 1e-16
Identities = 55/156 (35%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Frame = +3
Query: 60 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA--QS 233
D+V+ LV D GS + GFAG++ P+ PS + Q+ GD + Q+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 234 KR------GILTLKYP---------IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 368
KR G + P ++ G+I +W+ EKI H++ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLF 128
Query: 369 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLS 476
+E+ N +A REK+T+IMFE F PA Y++ VLS
Sbjct: 129 SESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLS 164
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +3
Query: 66 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 245
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 246 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 425
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 426 ETF 434
+ F
Sbjct: 116 DYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +3
Query: 66 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 245
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 246 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 425
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 426 ETF 434
+ F
Sbjct: 116 DYF 118
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 31.1 bits (67), Expect = 0.43
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 196 PMPTMTPWWRGRPTMDGKTARGASSPAKPALHMPEPL 86
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 30.3 bits (65), Expect = 0.75
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 158 GSPSPPGCHGRHGTEGLLRR**GPEQER-YPHPEVP 262
G P P G G HGTEG + GPE + YP P P
Sbjct: 510 GPPGPMGLRGPHGTEGETGK-QGPEGSKGYPGPMGP 544
>Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical
protein C41C4.4 protein.
Length = 967
Score = 29.9 bits (64), Expect = 0.99
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 179 TLVARATHDGREDGARRVVTGETGFAHAGA 90
T+V R T DGRE +RVV+ FAH A
Sbjct: 531 TVVYRGTFDGREVAVKRVVSEFVKFAHREA 560
>AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr protein
kinase protein.
Length = 967
Score = 29.9 bits (64), Expect = 0.99
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 179 TLVARATHDGREDGARRVVTGETGFAHAGA 90
T+V R T DGRE +RVV+ FAH A
Sbjct: 531 TVVYRGTFDGREVAVKRVVSEFVKFAHREA 560
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 158 GSPSPPGCHGRHGTEGL 208
G P PPGC G G GL
Sbjct: 112 GPPGPPGCRGEPGPSGL 128
>AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical
protein Y37H2C.1 protein.
Length = 718
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/75 (22%), Positives = 28/75 (37%)
Frame = +3
Query: 33 TKTHAKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 212
+K H D L++ +C GF G A + + G HQ + + +
Sbjct: 495 SKRHGMFVVDSSLRLIIKIVFSICSIGFTGYFAYKYFYERPSGLQSHQWICTPLSSQQKV 554
Query: 213 VGDEAQSKRGILTLK 257
+ D+ KR L K
Sbjct: 555 LEDDKNVKRRPLNSK 569
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 105 KAGFAGDDAPRAVFPSIVGRPRHQG 179
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 158 GSPSPPGCHGRHGTEGLLRR**GPEQERYPHPEVPHRTRYH 280
G P PG HGRHG+ R G R+ P P R +H
Sbjct: 358 GPPHCPGRHGRHGSRSHSPRGHG-HGGRHGPPHCPGRHGHH 397
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 158 GSPSPPGCHGRHGTEGL---LRR**GPEQERYPHPEVPH 265
G PS PG G HGT G L +Q++ H +PH
Sbjct: 366 GQPSTPGTPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPH 404
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 158 GSPSPPGCHGRHGTEGL---LRR**GPEQERYPHPEVPH 265
G PS PG G HGT G L +Q++ H +PH
Sbjct: 366 GQPSTPGTPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPH 404
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 158 GSPSPPGCHGRHGTEGLLRR**GPEQERYPHP 253
GS PG HGR G G+ + P YP P
Sbjct: 193 GSKGAPGTHGRQGMPGVRYQLGEPGPAGYPGP 224
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 285 NWDDMEKIWHHTFYNE--LRVAPEEHPV 362
+++D++ IWHH Y E L+ E +PV
Sbjct: 172 HYNDLQDIWHHARYKESQLKRGKELNPV 199
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 258 YPIEHGIITN-WDDMEKIWHHTFYNELRVAPEEHP 359
+P E+ I+++ WD + +W E +AP +HP
Sbjct: 452 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 486
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 258 YPIEHGIITN-WDDMEKIWHHTFYNELRVAPEEHP 359
+P E+ I+++ WD + +W E +AP +HP
Sbjct: 493 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 527
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 158 GSPSPPGCHGRHGTEGL 208
G P PPG G++GT G+
Sbjct: 250 GRPGPPGAPGKNGTPGV 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,993,445
Number of Sequences: 27780
Number of extensions: 230188
Number of successful extensions: 1459
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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