Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N06
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   3.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   6.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   8.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 13/53 (24%), Positives = 19/53 (35%)
 Frame = +2

Query: 104 RALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQCIRTPCC 262
           RA + +    C G V  +      CK  + F +G  Y    L   +  R   C
Sbjct: 399 RAFVRILCACCPGRVRRRYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRESSC 451


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 158 SLLNLSCKQIKDFVNGHNYRR 220
           S L+ SC    ++ N +NY++
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKK 325


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 171 KFSRDLLWTCPIHTT 127
           +F RDL+WT  ++ +
Sbjct: 91  QFVRDLIWTPTVYVS 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,147
Number of Sequences: 438
Number of extensions: 1201
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)