Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N05
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   1.8  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.3  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   4.1  

>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 108 YTGPYKVISRSDKTFQIDIAGKIVTVSIDRLK-PAYLLS 221
           Y GP+       + F+  I G+++ +S DRL+ PAY L+
Sbjct: 328 YGGPHAGFFACSEEFKRKIPGRLIGLSKDRLENPAYRLA 366


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 96  LQPPYTGPYKVISRSDKTFQIDIAGKIV 179
           L+P  T  Y +I + D+TF++ I G +V
Sbjct: 196 LKPGITNLYTLIVKPDQTFEVRINGDVV 223


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 217 SASPRRCKEPRSLHTAHPTPPTSRDPVEESGSR 315
           +A PR+   P    T H    T R PV  S SR
Sbjct: 190 NAVPRKSSSPPLSSTKHAPQSTERRPVRRSESR 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,519
Number of Sequences: 5004
Number of extensions: 44106
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)