Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N04
         (143 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       24   3.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    23   5.5  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    23   7.3  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    22   9.6  

>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 62  NRSTASERRLWRVFKTNPP 6
           N  + S+R LW+VFK   P
Sbjct: 371 NTKSLSKRNLWKVFKIYGP 389


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 4    RGGFVLKTRHNRLSEAVDLLQEALEGDI 87
            R GF L T      +A+ L +  +EG+I
Sbjct: 1059 RLGFALPTADTVYEQAIQLCERLMEGEI 1086


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 59  RSTASERRLWRVFKTNPP 6
           R TA  +++W  F  N P
Sbjct: 853 RRTAGNKKVWAAFNVNAP 870



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 4   RGGFVLKTRHNRLSEAVDLLQEAL 75
           R  FVL    N  S  +D+L EAL
Sbjct: 347 RSKFVLSQSRNIFSLYIDILMEAL 370


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 89  PMSPSKASCNRSTASERRLWRVFKT 15
           P+ PS+ S N     ++  W V KT
Sbjct: 837 PVPPSRPSANPYLLYQKTQWHVCKT 861


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,835
Number of Sequences: 5004
Number of extensions: 5990
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)