Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N04
         (143 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    29   0.68 
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858...    28   1.2  
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277...    27   2.8  
05_05_0044 - 21819193-21819418,21819531-21820759                       27   2.8  
02_01_0218 + 1433310-1435620,1435672-1435951,1436461-1436524,143...    26   3.6  
11_01_0580 + 4624111-4624549,4625243-4625955                           25   6.4  

>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 28  RHNRLSEAVDLLQEALEGDIGPANESRFYYHLG 126
           R N+L EA+DLL+   E       ES+ YY LG
Sbjct: 99  RQNKLQEALDLLKGQEETSAILQLESQIYYRLG 131


>07_03_0583 -
           19684388-19684498,19685083-19685216,19685765-19685888,
           19685982-19686251,19686961-19687155,19687236-19687328,
           19687411-19687539,19687646-19689277
          Length = 895

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 118 GSRNETH*QGLCRLLRPLVIGLRPPRG 38
           G  + TH Q LC LL+PL + ++  RG
Sbjct: 362 GQLSSTHLQELCELLKPLKLVVQTQRG 388


>09_06_0150 -
           21225086-21225511,21225775-21226125,21227180-21227718,
           21227813-21227929,21228038-21228290
          Length = 561

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 104 DSLAGPMSPSKASCNR-STASERRLWRVFKTNPPR 3
           D   GP S S +SC R S   E + W      PP+
Sbjct: 222 DDSGGPFSSSSSSCGRPSVRQEEKWWLPCPRVPPK 256


>05_05_0044 - 21819193-21819418,21819531-21820759
          Length = 484

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 13  FVLKTRHNRLSEAVDLLQEALEGDIGPANESRFYYH 120
           F+ K R N L+ A D  QEA+  D G A+ +  Y H
Sbjct: 435 FLWKAR-NDLAAAEDTYQEAIAADPGNAHHAAAYAH 469


>02_01_0218 +
           1433310-1435620,1435672-1435951,1436461-1436524,
           1436557-1436562
          Length = 886

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 28  RHNRLSEAVDLLQEALEGDIGPANES 105
           R NRL E  DLL E +E  I P   +
Sbjct: 361 RSNRLGEVYDLLVEMMEEGIAPGRST 386


>11_01_0580 + 4624111-4624549,4625243-4625955
          Length = 383

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 61  IGLRPPRGDYGVFLK 17
           +G  PPRG +G+F+K
Sbjct: 81  LGAAPPRGRFGIFVK 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,601,294
Number of Sequences: 37544
Number of extensions: 45847
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 28
effective length of database: 13,742,116
effective search space used: 261100204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)