Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N04
         (143 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    33   0.037
Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    33   0.037
U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical pr...    29   0.59 
AF188749-1|AAF00546.1|  335|Caenorhabditis elegans putative tyro...    26   3.2  
Z81500-8|CAM84816.1|  284|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 10  GFVLKTRHNRLSEAVDLLQEALEGDIGPANESRFYYHLGDAL 135
           G++LK   +++ + V L++++L+       + +FYY LG  L
Sbjct: 605 GYILKAHDDKVEQGVALMRKSLKNADNEITDPKFYYQLGHGL 646


>Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 10  GFVLKTRHNRLSEAVDLLQEALEGDIGPANESRFYYHLGDAL 135
           G++LK   +++ + V L++++L+       + +FYY LG  L
Sbjct: 605 GYILKAHDDKVEQGVALMRKSLKNADNEITDPKFYYQLGHGL 646


>U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical
           protein W08A12.1a protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 86  MSPSKASCNRSTASERRLWRVFKTNPP 6
           +SP K +C+RS + ER+++++  T  P
Sbjct: 88  VSPVKTTCSRSVSLERKVYKIVLTGGP 114


>AF188749-1|AAF00546.1|  335|Caenorhabditis elegans putative
           tyrosine kinase receptorW04G5.6A protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 28  RHNRLSEAVDLLQEALEGDIGPANESRFY 114
           R N+LSE V L+++ +E     ANE R Y
Sbjct: 304 RLNKLSEEVCLIEKTIETIESEANEQRCY 332


>Z81500-8|CAM84816.1|  284|Caenorhabditis elegans Hypothetical
           protein F11D11.14 protein.
          Length = 284

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 85  CRLLRPLVIGLRPPRGDYGVFL 20
           C+ +R  V G+ PP  +YGV++
Sbjct: 181 CQWIREAVNGMSPPWNNYGVWI 202


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 89   PMSPSKASCNRSTASER 39
            PM+PS  SCN S++  R
Sbjct: 1024 PMTPSTPSCNTSSSGRR 1040


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,050
Number of Sequences: 27780
Number of extensions: 33633
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 28
effective length of database: 11,962,358
effective search space used: 227284802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)