Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N04
         (143 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   1.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   1.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   7.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   7.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   7.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    19   7.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          18   9.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    18   9.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      18   9.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 85  CRLLRPLVIGLRP 47
           CRL + L +G+RP
Sbjct: 242 CRLKKCLTVGMRP 254


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
          protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 85 CRLLRPLVIGLRP 47
          CRL + L +G+RP
Sbjct: 39 CRLKKCLTVGMRP 51


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 85  IGPANESRFYYHLGDALLL 141
           I P +  RFY+ L   LLL
Sbjct: 81  IHPCSSFRFYWDLCMLLLL 99


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 85  IGPANESRFYYHLGDALLL 141
           I P +  RFY+ L   LLL
Sbjct: 81  IHPCSSFRFYWDLCMLLLL 99


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 85  IGPANESRFYYHLGDALLL 141
           I P +  RFY+ L   LLL
Sbjct: 81  IHPCSSFRFYWDLCMLLLL 99


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -1

Query: 65  CNRSTASERRLWR 27
           C      ERR+WR
Sbjct: 103 CPLEKLKERRIWR 115


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 31  HNRLSEAVDL 60
           H R+S A+DL
Sbjct: 330 HTRISTAIDL 339


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 104 DSLAGPMSPSKASCNRSTASERRLWR 27
           D L GP SP+    + S   E+ L R
Sbjct: 485 DDLFGPASPAYVHEDVSPTFEKPLVR 510


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 31  HNRLSEAVDL 60
           H R+S A+DL
Sbjct: 330 HTRISTAIDL 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,329
Number of Sequences: 438
Number of extensions: 448
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 28
effective length of database: 134,079
effective search space used:  2547501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)