Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N02
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   193   2e-50
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   190   1e-49
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   0.43 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   5.3  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   5.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.2  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  193 bits (470), Expect = 2e-50
 Identities = 88/154 (57%), Positives = 119/154 (77%)
 Frame = +1

Query: 67  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 246
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 247 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 426
           E SFRK +L  ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+
Sbjct: 78  EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137

Query: 427 FCIGFTNKDTLRQRKTCYAQHTQVRAIRKKMCEI 528
           F IGFT++   + +KT YAQ +Q+RAI +KM ++
Sbjct: 138 FVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQV 171


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  190 bits (463), Expect = 1e-49
 Identities = 87/154 (56%), Positives = 119/154 (77%)
 Frame = +1

Query: 67  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 246
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D   
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77

Query: 247 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 426
           E +FRK +L  ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RV
Sbjct: 78  EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137

Query: 427 FCIGFTNKDTLRQRKTCYAQHTQVRAIRKKMCEI 528
           F IGFT +   + +KT YAQ +Q+RAIR+KM ++
Sbjct: 138 FVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQV 171


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 202 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 375
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 376 IEANIDVKTT 405
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 427 FCIGFTNKDTLRQRKTCY 480
           FC G  NKDT+   K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 515 FFLIARTWVC*A*HVLRCLSVSLLVKPMQKTRRTYPSVVLTSMLASISVCHFF 357
           F+ +   W+C   H L+C  +S +V      R T  S   T++     V HFF
Sbjct: 341 FYSLHFLWLCTFFHALQCAIISSIVSQWFFYRDTKSSATKTNL-----VSHFF 388


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 325 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 423
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 147 PCQSHPGNKNCI*GSKGACF 206
           PC  H   K C  G  GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,020
Number of Sequences: 5004
Number of extensions: 44365
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)