Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N02
         (529 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   256   1e-68
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   256   1e-68
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   256   1e-68
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   241   5e-64
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   185   4e-47
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   108   5e-24
X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II transm...    28   9.0  
AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-P...    28   9.0  

>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  256 bits (628), Expect = 1e-68
 Identities = 124/170 (72%), Positives = 136/170 (80%)
 Frame = +1

Query: 19  KIKCLSXXXXXXXXXXIVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKG 198
           K K LS          +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKG
Sbjct: 5   KNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKG 64

Query: 199 RVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLI 378
           RVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLI
Sbjct: 65  RVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLI 124

Query: 379 EANIDVKTTDGYVLRVFCIGFTNKDTLRQRKTCYAQHTQVRAIRKKMCEI 528
           EA ++ KT DGY+LRVFCIGFT KD   QRKTCYAQ +QVR IR +M +I
Sbjct: 125 EAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDI 174


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  256 bits (628), Expect = 1e-68
 Identities = 124/170 (72%), Positives = 136/170 (80%)
 Frame = +1

Query: 19  KIKCLSXXXXXXXXXXIVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKG 198
           K K LS          +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKG
Sbjct: 5   KNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKG 64

Query: 199 RVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLI 378
           RVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLI
Sbjct: 65  RVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLI 124

Query: 379 EANIDVKTTDGYVLRVFCIGFTNKDTLRQRKTCYAQHTQVRAIRKKMCEI 528
           EA ++ KT DGY+LRVFCIGFT KD   QRKTCYAQ +QVR IR +M +I
Sbjct: 125 EAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDI 174


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  256 bits (628), Expect = 1e-68
 Identities = 124/170 (72%), Positives = 136/170 (80%)
 Frame = +1

Query: 19  KIKCLSXXXXXXXXXXIVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKG 198
           K K LS          +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKG
Sbjct: 5   KNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKG 64

Query: 199 RVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLI 378
           RVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLI
Sbjct: 65  RVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLI 124

Query: 379 EANIDVKTTDGYVLRVFCIGFTNKDTLRQRKTCYAQHTQVRAIRKKMCEI 528
           EA ++ KT DGY+LRVFCIGFT KD   QRKTCYAQ +QVR IR +M +I
Sbjct: 125 EAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDI 174


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  241 bits (589), Expect = 5e-64
 Identities = 120/172 (69%), Positives = 132/172 (76%), Gaps = 2/172 (1%)
 Frame = +1

Query: 19  KIKCLSXXXXXXXXXXIVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKG 198
           K K LS          +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KG
Sbjct: 5   KNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKG 64

Query: 199 RVFEVSLA-DLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 375
           RVFEVSL  DLQ D D E SFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 65  RVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 124

Query: 376 IEANIDVKTTDGYVLRVFCIGFTNKDTLRQRKTCYAQHTQVRAIRK-KMCEI 528
           IEA ++ KT DGY+LRVFCIGFT KD   QRKTCYA  +QVR IR  +M +I
Sbjct: 125 IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDI 176


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  185 bits (450), Expect = 4e-47
 Identities = 88/111 (79%), Positives = 94/111 (84%)
 Frame = +1

Query: 196 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 375
           GRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 376 IEANIDVKTTDGYVLRVFCIGFTNKDTLRQRKTCYAQHTQVRAIRKKMCEI 528
           IEA ++ KT DGY+LRVFCIGFT KD   QRKTCYAQ +QVR IR +M +I
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDI 124


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  108 bits (259), Expect = 5e-24
 Identities = 50/69 (72%), Positives = 56/69 (81%)
 Frame = +1

Query: 322 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLRQRKTCYAQHTQVR 501
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD   QRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 502 AIRKKMCEI 528
            IR +M +I
Sbjct: 61  KIRARMTDI 69


>X68794-1|CAA48691.2| 3004|Drosophila melanogaster type II
            transmembrane protein protein.
          Length = 3004

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 197  PFRP-SDAIFVPWVRLTRVVPTCLLVNMDGALTS 99
            PFRP +  +FVPW R+  + P  + ++ D   TS
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTS 996


>AE014298-1757|AAF48154.2| 3004|Drosophila melanogaster CG32659-PA
            protein.
          Length = 3004

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 197  PFRP-SDAIFVPWVRLTRVVPTCLLVNMDGALTS 99
            PFRP +  +FVPW R+  + P  + ++ D   TS
Sbjct: 963  PFRPLTRTVFVPWNRIVVLPPVQMQLSDDDETTS 996


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,752,023
Number of Sequences: 53049
Number of extensions: 544173
Number of successful extensions: 1298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)