Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N02
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.36 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 253 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI----DVKTTDGYVL 420
           SFR  R+ A +  GRN    + G      K+   +++  +++  ++    DV   D Y  
Sbjct: 410 SFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSMPKIKDVNIIDKYSR 469

Query: 421 RVFCIGF 441
            +F + F
Sbjct: 470 IIFPVSF 476


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 69  NLLLNTLLASFRKALYFYRP 10
           NL+L T+L SF   L FY P
Sbjct: 239 NLILPTVLISFLCVLVFYLP 258


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 235 DSDAERSFRKFRLIAEDVQGRNVLCN 312
           D  +++  R++RL AED+     + N
Sbjct: 167 DLTSDKLLRQYRLRAEDINMNTFIAN 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,597
Number of Sequences: 438
Number of extensions: 3054
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)