Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N01
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   6.7  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   6.7  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    24   8.8  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    24   8.8  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 408 THRSLKIEHLCRNIKRNSKHDTKKTVNSS 322
           +++S  ++H+  N+K NSK  T  +VNS+
Sbjct: 202 SNKSSPVKHVSPNVKNNSK-KTASSVNSN 229


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 50  HAPRRPLRQAQQTSSSTLVRWG 115
           HA  RP RQ + + +   +RWG
Sbjct: 52  HASNRPFRQDEYSWNDCWMRWG 73


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 138 SPFLRRELLSSGQRCIESTHS 200
           SP +RR  L+S +R +ES+ S
Sbjct: 254 SPMMRRSSLNSNRRSVESSSS 274


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 172 PDDNNSLLRNGLRGGPSPSTPTD*CRGRGLLGLSQGATRCMLPQSRPPKCGWLL 11
           P  + + L N  R    P+T         L G+  GAT  + P+S P    WL+
Sbjct: 255 PSTDKAQLLNRFRESIRPTTSNS-----SLSGIIPGATHNVGPKSSPEALKWLI 303


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 52  CTASPPATGPTDLVLY 99
           C  +PP  GP DL+LY
Sbjct: 257 CHFTPPNGGPLDLLLY 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,393
Number of Sequences: 5004
Number of extensions: 40751
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)