Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N01
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase pr...    30   0.83 
L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase pr...    30   0.83 
AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line hel...    30   0.83 
Z68227-8|CAA92513.1|  275|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF039052-11|AAF98632.1|  583|Caenorhabditis elegans Hypothetical...    27   4.4  
U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF295927-1|AAL83724.1|  377|Caenorhabditis elegans paraoxonase-l...    27   7.8  
AF003141-2|AAK21482.2|  377|Caenorhabditis elegans Mechanosensor...    27   7.8  

>U62772-1|AAB04136.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 18  QPHLGGRDCGSM-HRVAPCDRPNRPRPLH*SVGVEGEGP 131
           +P  G  +CG   HR   C  P +PR      GVEGEGP
Sbjct: 259 EPPRGCFNCGEQGHRSNECPNPAKPRE-----GVEGEGP 292


>L19948-1|AAC27384.1|  763|Caenorhabditis elegans RNA helicase
           protein.
          Length = 763

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 18  QPHLGGRDCGSM-HRVAPCDRPNRPRPLH*SVGVEGEGP 131
           +P  G  +CG   HR   C  P +PR      GVEGEGP
Sbjct: 259 EPPRGCFNCGEQGHRSNECPNPAKPRE-----GVEGEGP 292


>AF000197-1|AAB52901.2|  763|Caenorhabditis elegans Germ-line
           helicase protein 1 protein.
          Length = 763

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 18  QPHLGGRDCGSM-HRVAPCDRPNRPRPLH*SVGVEGEGP 131
           +P  G  +CG   HR   C  P +PR      GVEGEGP
Sbjct: 259 EPPRGCFNCGEQGHRSNECPNPAKPRE-----GVEGEGP 292


>Z68227-8|CAA92513.1|  275|Caenorhabditis elegans Hypothetical
           protein F49C12.10 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 228 VRLVNISYWGSGLTQYTSARMII 160
           VR +N+ YW S   QY   RM +
Sbjct: 37  VRFMNLGYWPSSAPQYAKMRMFM 59


>AF039052-11|AAF98632.1|  583|Caenorhabditis elegans Hypothetical
           protein T22D1.11 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 299 SHKINVFGELFTVFFVSCFELRLIFLHRCSIFKLLCV 409
           S K NV  +     ++S   + LIFL  C + K+ CV
Sbjct: 524 SAKFNVSEDQLPYLYISMLIIALIFLTGCLVGKICCV 560


>U51999-4|AAA96085.2|  627|Caenorhabditis elegans Hypothetical
           protein C43H6.4 protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 381 LCRNIKRNSKHDTKKTVNSSP-KTFILCEIRPGFMES*SNH*I*CYISRAKNVRL 220
           + R+I+ N++   +   +S     +++CE+RP      +     C++S AKNVRL
Sbjct: 126 IARDIRINNRWRIQDVKDSLQCLKYLICELRPQLPPLANAELNSCFLSLAKNVRL 180


>AF295927-1|AAL83724.1|  377|Caenorhabditis elegans paraoxonase-like
           protein MEC-6 protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 299 SHKINVFGELFTVFFVSCFELRLI 370
           +H IN F    T+F V+CF LRL+
Sbjct: 8   AHFINRFIIWITIFMVACFLLRLL 31


>AF003141-2|AAK21482.2|  377|Caenorhabditis elegans Mechanosensory
           abnormality protein6 protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 299 SHKINVFGELFTVFFVSCFELRLI 370
           +H IN F    T+F V+CF LRL+
Sbjct: 8   AHFINRFIIWITIFMVACFLLRLL 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,685,396
Number of Sequences: 27780
Number of extensions: 237251
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)