Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M24
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    28   1.2  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   3.7  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   4.9  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    25   6.4  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   6.4  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.5  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 467 PVFKDNILKSFMILCTEINY 526
           PVF+DN  + F+ +C E N+
Sbjct: 250 PVFQDNFFRDFLKVCDECNF 269


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 460 LIVKKIGNRHLATASQSHPLLVG*TSRTPHKNIT*YLTASPPPAPC 323
           LI K+I     ATAS S P  +    R   KNI   L +   P PC
Sbjct: 309 LISKEIERLKYATASNSTPQKIIQPQRHIQKNIVDDLFSVKKPLPC 354


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 239 NNEMGVCNYIQKYFKICYWK 180
           NNE+GVC  +++  KIC  K
Sbjct: 248 NNEIGVCQPLEEIGKICRQK 267


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 6   RLKSVFWYICNNVHFFSSEKYLINIFTE 89
           +LKSVF    + +H F+  KYL N+ T+
Sbjct: 168 KLKSVFEV--DTLHMFTMNKYLTNLMTK 193


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 413 LTSGCQVTISNFFYN*ILPVFKDNILKSFMILCTEINYT*FLVKGRGYSETSLRII 580
           L++GC   I++F+       F +N+LK++ I C     T    K      TS  II
Sbjct: 139 LSAGCFRYINDFYIYTKSLDFNENLLKAWEIYCLAEAQTCIFSKANSNDTTSESII 194


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 167 LLKCLSEKGARN*FYNFTVNLQSL*KLRKYINQIFLAGEK 48
           LLK L+EK A+  F   T  + S  +   Y++ + L G+K
Sbjct: 134 LLKALAEKTAKLIFEKPTGYIDSCEEFHLYLDVLLLVGDK 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,905
Number of Sequences: 5004
Number of extensions: 46013
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)