Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M24
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546     30   1.2  
10_08_0213 - 15912048-15912716                                         30   1.6  
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    29   2.1  
11_01_0802 - 7115854-7116778,7117087-7117211,7118947-7119426,712...    29   2.8  
04_04_0986 - 29931302-29932834                                         29   3.7  
05_04_0204 - 19022329-19023990                                         28   5.0  
05_05_0093 + 22336593-22337198,22338123-22339076                       27   8.7  

>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
          Length = 532

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 339 LLQPLVMFLNPHPTYELHVINE 274
           L+ P   F+NP PTYE+  +N+
Sbjct: 450 LMDPYFFFMNPRPTYEITFLNQ 471


>10_08_0213 - 15912048-15912716
          Length = 222

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 219 TNSHFIIAINFACLKLGIVH*SREVRK*GVGSKTSQGAGGG 341
           T  HF++ I    L +G+   +R +   G+G +   G GGG
Sbjct: 3   TTKHFVLLIILVLLSIGMTTSARTLLGYGIGGEGGGGGGGG 43


>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -1

Query: 218 NYIQKYFKICYWKILLCLLKCLSEKG 141
           N +Q+Y++  +W++ + L KCLSE+G
Sbjct: 821 NILQEYYEP-FWQLWVSLFKCLSEEG 845


>11_01_0802 -
           7115854-7116778,7117087-7117211,7118947-7119426,
           7120005-7120222,7120351-7120441
          Length = 612

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 231 FIIAINFACLKLGIV-H*SREVRK*GVGSKTSQGAGGGDAVRYQVIF 368
           +++A+   CLK  I+ H + + R+ G G     G  GGD  R    F
Sbjct: 150 YLVALGSGCLKPNIIAHGADQFRRGGGGGGDGDGDDGGDGKRLSSYF 196


>04_04_0986 - 29931302-29932834
          Length = 510

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 185 WKILLCLLKCLSEKG 141
           +K+LLC LKCLS KG
Sbjct: 213 YKLLLCRLKCLSSKG 227


>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -1

Query: 233 EMGVCNYIQKYFKIC---YWKILLCLLKCLSEKGARN*FYNFTVNLQSL*KLRKYINQIF 63
           +  V NY     K+C    W  ++ L   +++KG     + F + + SL KL +    +F
Sbjct: 345 DANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALF 404

Query: 62  LAGEKMYIVTNVPKN 18
           L   K ++ T +  N
Sbjct: 405 LLRSKEFVATVITYN 419


>05_05_0093 + 22336593-22337198,22338123-22339076
          Length = 519

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 LQPLVMFLNPHPTYELHVINE 274
           + P+  F+NP P YE+  +N+
Sbjct: 422 MDPIFFFMNPRPVYEVTFLNQ 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,557,556
Number of Sequences: 37544
Number of extensions: 281044
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)