Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M24
         (602 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57758-1|AAB49932.1|  360|Drosophila melanogaster putative thyro...    29   6.4  
AY069836-1|AAL39981.1|  444|Drosophila melanogaster SD08021p pro...    29   6.4  
AF129079-1|AAD28604.1|  444|Drosophila melanogaster COP9 signalo...    29   6.4  
AE014134-1594|AAF52736.1|  444|Drosophila melanogaster CG9556-PB...    29   6.4  
AE014134-1593|AAN10685.1|  444|Drosophila melanogaster CG9556-PA...    29   6.4  

>U57758-1|AAB49932.1|  360|Drosophila melanogaster putative thyroid
           receptor interactingprotein protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 103 NHCKSSVNILIKYFSLEKKCTLLQMYQKT 17
           NH + S+N ++ Y S  K   LLQ + +T
Sbjct: 107 NHSEKSINSILDYISTSKNMALLQNFYET 135


>AY069836-1|AAL39981.1|  444|Drosophila melanogaster SD08021p
           protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 103 NHCKSSVNILIKYFSLEKKCTLLQMYQKT 17
           NH + S+N ++ Y S  K   LLQ + +T
Sbjct: 107 NHSEKSINSILDYISTSKNMALLQNFYET 135


>AF129079-1|AAD28604.1|  444|Drosophila melanogaster COP9
           signalosome subunit 2 CSN2 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 103 NHCKSSVNILIKYFSLEKKCTLLQMYQKT 17
           NH + S+N ++ Y S  K   LLQ + +T
Sbjct: 107 NHSEKSINSILDYISTSKNMALLQNFYET 135


>AE014134-1594|AAF52736.1|  444|Drosophila melanogaster CG9556-PB,
           isoform B protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 103 NHCKSSVNILIKYFSLEKKCTLLQMYQKT 17
           NH + S+N ++ Y S  K   LLQ + +T
Sbjct: 107 NHSEKSINSILDYISTSKNMALLQNFYET 135


>AE014134-1593|AAN10685.1|  444|Drosophila melanogaster CG9556-PA,
           isoform A protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 103 NHCKSSVNILIKYFSLEKKCTLLQMYQKT 17
           NH + S+N ++ Y S  K   LLQ + +T
Sbjct: 107 NHSEKSINSILDYISTSKNMALLQNFYET 135


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,090,345
Number of Sequences: 53049
Number of extensions: 491918
Number of successful extensions: 1346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)