Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M23
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    33   0.038
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    28   0.82 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   2.5  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   3.3  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   7.6  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   7.6  

>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 32.7 bits (71), Expect = 0.038
 Identities = 19/83 (22%), Positives = 37/83 (44%)
 Frame = +2

Query: 134 KLMGGQILRISMALSAILGKAVRVTNIRAGRSKPGLAAQHLKGIQLVAEMCQCSLKGGNI 313
           +  G + L   + L+ + G  +RV  I    + PG+    +  ++L+ ++   S+   + 
Sbjct: 8   RFKGCEYLTHRLVLATLSGTPIRVEGIYPDEADPGVKDYQVSFLRLLEKLTNGSVIEISY 67

Query: 314 GSTEIEFRPGKIRGGHYTANTQT 382
             T   +RPG I GG    +  T
Sbjct: 68  TGTSFIYRPGNIIGGRVVHDCPT 90


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 551 STPNFLNVCLNTSVIKSICGAISAFVPP 468
           +TPN+ NVCL+TS+I     ++ + + P
Sbjct: 514 NTPNYSNVCLSTSLINRSLPSLKSTMHP 541


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 299 SNYIGTFLLLIVFLSNVALPILVYSA 222
           S+Y+  F LL+  +SNV LP++ + +
Sbjct: 432 SSYVWMFALLVRDVSNVTLPVIFFDS 457


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 239 LAAQHLKGIQLVAEMCQCSLKGGNIGSTEIEFRPGKIRGGHYTANTQTA 385
           +  QH      VA     S KG  +GST ++ R  ++ GG YT +T T+
Sbjct: 265 VVVQHRMDEDYVAPFKPFSGKGQRLGSTYMQPRMSQMPGGLYT-DTSTS 312


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 239 LAAQHLKGIQLVAEMCQCSLKGGNIGSTEIEFRPGKIRGGHYTANTQTAG 388
           ++   ++G+    +   C+L GG     E    PG    GHY AN  + G
Sbjct: 549 VSTSFVEGVVKGCKQAGCALVGG-----ETSEMPGLYHDGHYDANGTSVG 593


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 451 VTLDLIGGTNADMAPQIDFMTEVFRHTLRKFGVDF 555
           V L  + G N D+  + + +++VF +    FG+DF
Sbjct: 84  VKLFFLDGENIDIKKREETLSQVFYNLHMLFGIDF 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,051
Number of Sequences: 5004
Number of extensions: 45624
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)