Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M23
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659...    31   0.48 
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462...    29   2.5  
03_06_0058 - 31330067-31330978                                         28   5.9  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    28   5.9  
03_06_0573 - 34815576-34815785,34816117-34816327,34816448-348166...    27   7.7  

>06_02_0038 +
           10865068-10865150,10865249-10865335,10865835-10865936,
           10867000-10870078
          Length = 1116

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -1

Query: 329 RFLLILCCLLSNYIGTFLLLIVFLSNVALPILVYS-APRVCL*LVPLF 189
           RF   L C  + + G+ +++I+ LSN A+  +V S A R+C+ LV LF
Sbjct: 432 RFKAFLVCNATAFAGSLVIIIMLLSNTAVDHVVKSNALRLCV-LVSLF 478


>05_04_0389 -
           20845490-20845600,20845697-20846006,20846097-20846242,
           20846319-20846426,20846508-20846615,20846997-20847109,
           20847340-20847437,20847530-20847714,20847811-20847953,
           20848293-20848377,20848486-20848624,20848686-20848780,
           20848894-20849037,20849114-20849206,20849310-20849376,
           20849529-20849641,20849750-20849845,20853885-20854058
          Length = 775

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 536 LNVCLNTSVIKSICGAISAF-VPPIRSRVTGPSA-IRAQG 423
           L + +NT  + ++CG +  F VPP++SR   P   I  QG
Sbjct: 662 LQITVNTMSVTTVCGNVDEFSVPPLQSRGKVPKVRIWCQG 701


>03_06_0058 - 31330067-31330978
          Length = 303

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 533 NVCLNTSVIKSICG-AISAFVPPIRSRVTGPSAIRAQGNATC 411
           N+ L+ ++I+ I   A+S   PP R  VTG S      +  C
Sbjct: 60  NIALHNALIRGIISNALSGVPPPSRQAVTGQSGTTTAPSGQC 101


>02_05_0220 -
           26885502-26885561,26885940-26886739,26887055-26887421,
           26887942-26888055,26888132-26888228,26889115-26889235,
           26889306-26889390,26889494-26889643,26889871-26889987,
           26890123-26890221,26890439-26890495,26890581-26890664,
           26890759-26890828,26891015-26891169,26891557-26892095,
           26892327-26892393,26892436-26892984,26893574-26893768,
           26894485-26894569,26895822-26896441,26897154-26897486,
           26897552-26897616,26897868-26897955,26898250-26898331,
           26898720-26898796,26899152-26899256,26899496-26899630,
           26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 382 CWVKSISLLLQVALPCALMADGP-VTLDLIGGTNADMAP 495
           CW  S++L L+ A+ C   A GP VT +L G  +  +AP
Sbjct: 252 CWATSLTLALEKAVGCK-EAKGPAVTFELGGEGSGLLAP 289


>03_06_0573 -
           34815576-34815785,34816117-34816327,34816448-34816623,
           34816701-34816882,34817431-34817580,34817654-34817894
          Length = 389

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 134 KLMGGQILRISMALSAILGKAVRVTNIRAGRSKPGLAAQHLKGIQLV 274
           +L G +  R  + L+ +   A+ + +IR+G + PGL    +  + L+
Sbjct: 8   RLSGSRHFRQRVVLATLTSTAITIDDIRSGGAAPGLRPHEVSLLHLL 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,661,330
Number of Sequences: 37544
Number of extensions: 298478
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)