Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M23
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58758-8|AAB93426.2|  379|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AF078788-9|AAC26963.1|  132|Caenorhabditis elegans Hypothetical ...    30   0.99 
AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical ...    28   4.0  
U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U23524-5|AAC46821.2|  252|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U58758-8|AAB93426.2|  379|Caenorhabditis elegans Hypothetical
           protein ZK1127.5 protein.
          Length = 379

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = +2

Query: 143 GGQILRISMALSAILGKAVRVTNIRAGRSKPGLAAQHLKGIQLVAEMCQCSLKGGNIGST 322
           G    RI +A S + G+ +R+ NIR    +PG+     K I L+ ++   +    +   T
Sbjct: 10  GCNFFRIRLAYSILSGRPIRIINIRKNDDRPGIRDFESKLIGLLEKVTNGTKVEISRTGT 69

Query: 323 EIEFRPGKIRGG 358
           ++ FRPG I GG
Sbjct: 70  QVIFRPGMITGG 81


>AF078788-9|AAC26963.1|  132|Caenorhabditis elegans Hypothetical
           protein ZC190.10 protein.
          Length = 132

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 216 RMFVTRTAFPNIALSAIDIRKICPPI-NFH*FRHLFL 109
           R+ +TR    N+A  A   R  CP + NFH FR L L
Sbjct: 9   RILITREGKANVAEEAAKARPFCPMLKNFHRFRSLNL 45


>AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical
           protein H16D19.4 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 324 KSSLDQGRSVEVIIQPIHRLLGKVNKSPSTSGITL 428
           +S  + GR+ E++ Q +H++  +   SP TS + L
Sbjct: 187 RSGQNHGRTEEILAQLVHKVPAEAMSSPPTSDVLL 221


>U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical
           protein F13D11.4 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 343 EDPWRSLYSQYTDCWVKSISLLLQVA 420
           ED W +L S   DC++KS +L  + A
Sbjct: 140 EDSWSNLESDMVDCYIKSKTLAEKAA 165


>U23524-5|AAC46821.2|  252|Caenorhabditis elegans Hypothetical
           protein C29F5.2 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 143 PSISINSDISFYALRGLTIGCNTI**IVI*NIYINTFCAKQMAN 12
           P  SIN +  FY+ +GL+   +     +I   ++N FCA+ + N
Sbjct: 128 PCKSINYNFHFYSFKGLSREDSKKFEEMIDQNFVNNFCAENLLN 171


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 162 YQWH-LALY*-EKRYELQTYARGGVNQDWQR 248
           +QWH LALY     Y++ +  RGG + DW R
Sbjct: 50  FQWHILALYACWYFYDMDSPRRGGYSSDWVR 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,909
Number of Sequences: 27780
Number of extensions: 256665
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)