Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M22
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0462 + 18444928-18444999,18446948-18447985,18448015-184488...    30   0.92 
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115...    27   6.5  
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994...    27   8.6  

>07_03_0462 +
           18444928-18444999,18446948-18447985,18448015-18448845,
           18449112-18449120
          Length = 649

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 21  MNSARCEVSSLSPKCLLYSNDNQLSLLLTNKK 116
           M+   CE   LSPKC +YS    L  L+T KK
Sbjct: 243 MDPVYCETGRLSPKCDVYSFGVVLLELITRKK 274


>08_02_1060 +
           24007980-24008662,24010078-24010219,24010293-24011537,
           24012453-24013040
          Length = 885

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 357 PICDKILKKKKRYFSHV 307
           P+C+K  +++ RYF HV
Sbjct: 370 PVCNKTFEEQSRYFGHV 386


>08_02_1057 +
           23995782-23996446,23998026-23998167,23998242-23999486,
           23999521-23999529
          Length = 686

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 357 PICDKILKKKKRYFSHV 307
           P+C+K  +++ RYF H+
Sbjct: 364 PVCNKTFEEQSRYFGHI 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,424,761
Number of Sequences: 37544
Number of extensions: 145553
Number of successful extensions: 235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)