Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M22
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   3.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   3.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   3.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   3.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   3.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.9  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 42  VSSLSPKCLLYSNDNQLSLLLTNKKYYQRI 131
           +SSLS K +  +N+N   L   N  Y ++I
Sbjct: 82  ISSLSNKTIHNNNNNYKKLQYYNINYIEQI 111


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 42  VSSLSPKCLLYSNDNQLSLLLTNKKYYQRI 131
           +SSLS K +  +N+N   L   N  Y ++I
Sbjct: 82  ISSLSNKTIHNNNNNYKKLQYYNINYIEQI 111


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 42  VSSLSPKCLLYSNDNQLSLLLTNKKYYQRI 131
           +SSLS K +  +N+N   L   N  Y ++I
Sbjct: 82  ISSLSNKTIHNNNNNYKKLQYYNINYIEQI 111


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 42  VSSLSPKCLLYSNDNQLSLLLTNKKYYQRI 131
           +SSLS K +  +N+N   L   N  Y ++I
Sbjct: 82  ISSLSNKTIHNNNNNYKKLQYYNINYIEQI 111


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 42  VSSLSPKCLLYSNDNQLSLLLTNKKYYQRI 131
           +SSLS K +  +N+N   L   N  Y ++I
Sbjct: 315 ISSLSNKTIHNNNNNYKKLQYYNINYIEQI 344


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 1   CGSPGAA*IRHDVKYLHYRLSVYYTQTIISYRCCSQIKNI 120
           C     A I  D+    Y   V   + + S  CC  +KNI
Sbjct: 170 CKDKNMAPILKDLMETSY-FKVVVVEDVDSVECCGALKNI 208


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 118 YFLFVSNNDN 89
           YFL+ S NDN
Sbjct: 79  YFLYTSKNDN 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,484
Number of Sequences: 438
Number of extensions: 2582
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)