Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M21
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   4.3  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   7.5  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    25   7.5  

>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 462 CLLSAIDSRLDEGSFIESKTDLNLKIDIQLSV 367
           C+LS  +   D   FI  + DL L  ++ LSV
Sbjct: 398 CILSGANMDFDRLRFIAERADLGLNKEVFLSV 429


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 435 LDEGSFIESKTDLNLKIDIQLSVFNFEY**YIYSRLII 322
           +++ SF+ +    ++K D      N+E   Y+Y+RL+I
Sbjct: 208 MNQNSFLNNFNFEHIKADFAFRQKNYEESIYLYARLLI 245


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 224 DSDVVFTDYVNAKKRDRLY 168
           DSD+VFT++V  +K   +Y
Sbjct: 164 DSDIVFTNHVCERKHSGIY 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,133
Number of Sequences: 5004
Number of extensions: 26354
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)