Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M21
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0293 - 17372071-17372217,17372301-17372471,17373334-173734...    27   7.4  
01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801           27   9.8  

>02_03_0293 -
           17372071-17372217,17372301-17372471,17373334-17373435,
           17373803-17374216,17374369-17374512,17374634-17375647
          Length = 663

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 215 VVFTDYVNAKKRDRLYYNLTYSHRRCIS*CIK 120
           V + D V+A + +RL   +T  HR C+S  +K
Sbjct: 279 VNYVDVVDAPRLERLMLWMTSKHRSCLSSMVK 310


>01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801
          Length = 721

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = +2

Query: 131 KKCI---FYENKLNYNITDPSS*R 193
           ++CI   F+ENKL+YNI D  S R
Sbjct: 176 ERCIAEFFFENKLDYNIADSVSYR 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,691,460
Number of Sequences: 37544
Number of extensions: 125264
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)