Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M21
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-4|CAB03950.1|  345|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    27   8.8  

>Z81481-4|CAB03950.1|  345|Caenorhabditis elegans Hypothetical
           protein C38D9.4 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 377 WMSIFKFKSVLLSIKLPSSSRESMADNK 460
           W++I+KF S  LSI+    S  S  D K
Sbjct: 16  WVNIYKFGSFSLSIRKVCKSLRSFVDTK 43


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 290 RNGLVFILFYTSKFTNIELC*IDSDVVFTDYVNAKKR 180
           RN L+F+ FY + F  IE C   + +   DY   K+R
Sbjct: 111 RNSLLFVAFYFAPFPVIERC--FATLYMHDYETNKRR 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,410,402
Number of Sequences: 27780
Number of extensions: 140840
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)