Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M20
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   3.6  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   4.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.3  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.3  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 152 RGLLGDGNNEPYDDFRLPNGKI-CTSESEF 238
           RG+L D +N   DDF L N +I   SE EF
Sbjct: 38  RGILYDSDNRVVDDFFLNNKRIVLDSEIEF 67


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 167 DGNNEPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQT 283
           DGN   Y  FR PN  + T+      A  L+R C K++T
Sbjct: 36  DGNLLLYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKT 74


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +3

Query: 183 HTMTSDYLTERSAHLRVNLATHIA--WRAA--VLKSRL---PSTPTTRCTLLC 320
           H M+ D LT+   +   NL T IA  W     + K  L   P+ PTT+C L C
Sbjct: 45  HLMSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNC 97


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 92   CTSKLEVCYFEVNGFYLG 145
            C+S  E CYF+ + FY G
Sbjct: 4062 CSSWKEPCYFDDSDFYFG 4079


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 331 VNRCSEESPHFGQSVYY 381
           +N CS +SP F  S+YY
Sbjct: 19  LNECSIDSPSFRASMYY 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,639
Number of Sequences: 5004
Number of extensions: 41032
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)