Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M20
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.11 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 62  LGSKYGLMAFCTSKLEVCYFEVNGFYLGKLRG-LLGDGNNEPYDDFRLPNGKICTSESEF 238
           +   +G     T+K +  YF+  G   GK RG ++ + NN+ +   +  +     +ESEF
Sbjct: 1   MADDWGKTVSYTNKKDESYFDEGGRSYGKGRGFIIQNNNNDDWSVGKKNSNSGTINESEF 60

Query: 239 GN 244
            +
Sbjct: 61  ND 62


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 137  YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 256
            Y   +RGL G+ +++  +DF  P   +      F  +Y+L
Sbjct: 1590 YRYSVRGLCGNFDHDSTNDFVGPKNCLFRKPEHFVASYAL 1629


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 280  DSRALPPPDARCSA 321
            D  ++PP D RC+A
Sbjct: 1109 DVPSIPPEDVRCAA 1122


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 280  DSRALPPPDARCSA 321
            D  ++PP D RC+A
Sbjct: 1105 DVPSIPPEDVRCAA 1118


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 279 WTLGQLRARLYALPNSL 229
           W LG L  ++YA+  SL
Sbjct: 118 WVLGPLFCQIYAMLGSL 134


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 279 WTLGQLRARLYALPNSL 229
           W LG L  ++YA+  SL
Sbjct: 84  WVLGPLFCQIYAMLGSL 100


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 484 RRYPLARSQAWCKSLAASVPDTAWMH 407
           +R  +  S AW  S+  S+P T   H
Sbjct: 151 KRGKIMLSFAWIGSVVCSLPQTIVFH 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,746
Number of Sequences: 438
Number of extensions: 2964
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)