Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M19
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 285 3e-78
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 136 2e-33
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 131 7e-32
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 80 2e-16
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 1.2
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 1.6
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 2.8
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 3.7
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 4.9
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 4.9
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 8.5
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 8.5
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 285 bits (699), Expect = 3e-78
Identities = 126/165 (76%), Positives = 149/165 (90%)
Frame = +3
Query: 9 NMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 188
NMVPFPRLHFFM GFAPL + GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA
Sbjct: 256 NMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAA 315
Query: 189 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQ 368
+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKM+ATFIGNST+IQ
Sbjct: 316 LFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQ 375
Query: 369 ELFKRISEQFTAMFRRNAFLHWYTGDGMDEMEFTEAESNMNDLVS 503
E+F+R+ +QF+AMFRR AFLHWYTG+GMDEMEFTEAESNMNDLVS
Sbjct: 376 EIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 136 bits (329), Expect = 2e-33
Identities = 59/168 (35%), Positives = 98/168 (58%), Gaps = 8/168 (4%)
Frame = +3
Query: 9 NMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 188
N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N M CDPR GRY+
Sbjct: 258 NLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCL 317
Query: 189 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATF 344
++RG + ++V + I+ K + FV+W P K +CD PP+ ++ A
Sbjct: 318 LYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCM 377
Query: 345 IGNSTAIQELFKRISEQFTAMFRRNAFLHWYTGDGMDEMEFTEAESNM 488
+ N+T+I E + R+ +F M+ + AF+HWY G+GM+E EF+EA ++
Sbjct: 378 LSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 131 bits (316), Expect = 7e-32
Identities = 56/168 (33%), Positives = 98/168 (58%), Gaps = 8/168 (4%)
Frame = +3
Query: 9 NMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 188
N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N M CDPR GRY+
Sbjct: 262 NLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCL 321
Query: 189 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATF 344
++RG + ++V + +I+++ + FV+W P K +C PP+ + A
Sbjct: 322 LYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCM 381
Query: 345 IGNSTAIQELFKRISEQFTAMFRRNAFLHWYTGDGMDEMEFTEAESNM 488
+ N+T+I E + R+ +F M+ + AF+HWY G+GM+E EF+EA ++
Sbjct: 382 LSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 429
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 80.2 bits (189), Expect = 2e-16
Identities = 43/172 (25%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Frame = +3
Query: 9 NMVPFPRLHFFMPGFAPLTSRGSRQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYL 176
+++P PR HF + + P T++ + +A+ TV ++ +++ KN M + +P + ++
Sbjct: 259 SLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFI 318
Query: 177 TVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFI 347
++ I +G +V + +L I+ + + F+ W P +++ A+ P +++ +
Sbjct: 319 SILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLML 378
Query: 348 GNSTAIQELFKRISEQFTAMFRRNAFLHWYTGDGMDEMEFTEAESNMNDLVS 503
N T+I LFKR +Q+ + +RNAFL Y + + E + E +S+ D+V+
Sbjct: 379 ANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSS-RDVVA 429
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 351 NSTAIQELFKRISEQFTAMFRRNAFLHWYTGDGMDE 458
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 189 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 362
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 363 IQELFK 380
+EL++
Sbjct: 403 KEELYE 408
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 266 EVRRVLVLDVKHLLIDFLHRHTTAEDGCDGEVAAV 162
+V +V D + LL + HR T D DG+ A V
Sbjct: 80 QVSHKIVTDARLLLCNMTHRGATGADTRDGDGAGV 114
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 168 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 293
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 168 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 284
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 395 VHRYVQTQCFLALVHRRWHGRDGVHGGGEQHER 493
V R L+ + +R + + +HGG +QH+R
Sbjct: 675 VDRQESADALLSDLMKRGYTSNSIHGGKDQHDR 707
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 228 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 350
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 317 PRTKDGSNLHRQLDRYPGAVQ 379
P +KDG+ +HR+L AVQ
Sbjct: 102 PSSKDGAKVHRELRNAINAVQ 122
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -1
Query: 377 EQLLDSGRVADEGCCHL*SAGRDVAHGSLHVVWDPFHEVRRVLVLDV 237
+ +L+ ++ +G C+ + R A+ S + FHE +V + D+
Sbjct: 171 DPILEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDI 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,016
Number of Sequences: 5004
Number of extensions: 35618
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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