Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M19
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    25   0.34 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.5  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 288 RCLG--SIPRSTTSSCFGC*ASAHR 220
           +C G  SI + TTS C GC  S H+
Sbjct: 21  KCSGYPSIRQGTTSYCLGCGDSCHK 45


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 497 EIVHVALRLRELHLVHAIAGVPVQESIASEHSGELFRDAL 378
           +I+ + +    LH+++++AG+ + E  A+  +  L+ D L
Sbjct: 5   QILTLGVLFNTLHIIYSVAGLKIFE--ANPDTKRLYDDLL 42


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 478 SASVNSISSMPSPVYQCKKALR-LNIAVN 395
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 464  VHGGGEQHERSR 499
            VH GG+Q +R R
Sbjct: 1429 VHNGGQQEDRDR 1440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,594
Number of Sequences: 438
Number of extensions: 2588
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)