Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M18
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 208 5e-55
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 207 8e-55
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 30 0.22
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 28 0.91
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 1.6
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 26 3.7
SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.4
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 25 6.4
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.4
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 8.5
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 208 bits (508), Expect = 5e-55
Identities = 97/159 (61%), Positives = 111/159 (69%)
Frame = +3
Query: 123 KSEVVAWASLPLPFVFNAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRA 302
K V+ +L LPFVF APIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA
Sbjct: 13 KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRA 72
Query: 303 VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXX 482
+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 73 LARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASG 132
Query: 483 XXXLVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFL 599
L+ ARGH +E+IPE+PLVV D VQ KTK+AV L
Sbjct: 133 VPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALL 171
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 207 bits (506), Expect = 8e-55
Identities = 96/159 (60%), Positives = 111/159 (69%)
Frame = +3
Query: 123 KSEVVAWASLPLPFVFNAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRA 302
K V+ ++ LPFVF APIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA
Sbjct: 13 KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRA 72
Query: 303 VARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXX 482
+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 73 LARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASG 132
Query: 483 XXXLVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFL 599
L+ ARGH +E+IPE+PLVV D VQ KTK+AV L
Sbjct: 133 VPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALL 171
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 30.3 bits (65), Expect = 0.22
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 202 SLTRSGLMGALNTNGRGSEAHATTSLFSG 116
S T SGL GA NTN + ++ T LF G
Sbjct: 593 STTTSGLFGASNTNNQAQTSNFGTGLFGG 621
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 28.3 bits (60), Expect = 0.91
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -2
Query: 214 DTWTSLTRSGLMGALNTNGRGSEAHATTSLFSGYTRHLKVGVLTRII 74
DT T + S L L++N ++ ++LFSG + HLK+ LT +I
Sbjct: 351 DTTTEIL-SNLENPLSSNFLRNDLCKFSNLFSGVSGHLKIQPLTLVI 396
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 83 QNHFGLINGSNSSKKPIIDGGKD 15
Q H +N SNSSKK IID KD
Sbjct: 1082 QLHMSKLNKSNSSKKIIIDPLKD 1104
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 464 GGHGSTSLP*VHATVPAPPRLGRREHTSAAAHVTECTLPR 345
G H V AT+P PP G R S A + CTLP+
Sbjct: 42 GAHEIPGSTGVFATMPRPPLEGCRWRCSIA--LPNCTLPK 79
>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 527 NLLNNMPSSLNEDRYPGRCHGGGHGST 447
++LN +P DRY +CH ST
Sbjct: 65 DVLNGLPLLKKRDRYTTQCHSTNMAST 91
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 444 SAVGSRDGASASTAWSARTYVRRGTCYRMHPAQIC 340
S V S ++ + S T+V T Y++ P QIC
Sbjct: 132 STVSSTPVSTIYSGTSGTTFVSSSTTYQVIPTQIC 166
>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 527 NLLNNMPSSLNEDRYPGRCHGGGHGST 447
++LN +P DRY +CH ST
Sbjct: 65 DVLNGLPLLKKRDRYTTQCHSTNMAST 91
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 521 LNNMPSSLNEDRY-PGRCHGGGHGSTSLP*VHATVPA 414
L N+P +L RY HG HGS S P VP+
Sbjct: 47 LYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPS 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,078
Number of Sequences: 5004
Number of extensions: 44760
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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