Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M18
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 198 2e-51
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 195 3e-50
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.043
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.076
03_05_0366 - 23505755-23506441 32 0.40
11_01_0338 + 2522698-2523213 31 0.93
07_03_1721 - 29023979-29025295 29 2.2
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 29 2.2
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 29 2.2
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 29 3.8
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 29 3.8
06_03_0865 - 25516072-25517007 29 3.8
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.8
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 5.0
03_04_0017 - 16468486-16468505,16468597-16468807,16469522-164702... 28 6.6
03_02_0538 + 9299639-9300046,9300362-9300509,9300648-9300652,930... 28 6.6
03_01_0092 - 731069-731434,731569-733080 28 6.6
10_08_0498 - 18342517-18342960,18343164-18343397,18343569-183437... 27 8.7
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 8.7
04_01_0588 + 7657510-7657992,7658397-7658843 27 8.7
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 8.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 198 bits (484), Expect = 2e-51
Identities = 92/152 (60%), Positives = 105/152 (69%)
Frame = +3
Query: 144 ASLPLPFVFNAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRV 323
+SL L VF AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV
Sbjct: 24 SSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRV 83
Query: 324 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXLVQA 503
GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH LV A
Sbjct: 84 PGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLA 143
Query: 504 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFL 599
RGH +E +PELPLV+SD + I KT QA+ L
Sbjct: 144 RGHRIETVPELPLVISDSAESIEKTSQAIKIL 175
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 195 bits (475), Expect = 3e-50
Identities = 89/149 (59%), Positives = 102/149 (68%)
Frame = +3
Query: 144 ASLPLPFVFNAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRV 323
A + +P V APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV
Sbjct: 23 AGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRV 82
Query: 324 RGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXLVQA 503
GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH LV A
Sbjct: 83 PGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLA 142
Query: 504 RGHIVEKIPELPLVVSDKVQEINKTKQAV 590
RGH +E +PE PLVVSD ++ I KT Q++
Sbjct: 143 RGHRIEGVPEFPLVVSDSIESIEKTAQSI 171
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3
Query: 216 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 386
+++ A ++E G A+SW TGRA A + R R GG R A N G R
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.076
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 382 PPRHMLPNAPCPDLWVPPP 326
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.9 bits (69), Expect = 0.40
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 141 WASLPLP---FVFNAPIRPDLVNDVHVSMSKNAR-QPYCVSKEAGHQTSAESWGTGRAVA 308
W P P ++ AP D +V S + R P C S E + +AES TG A
Sbjct: 98 WERHPWPHDSWIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHT 157
Query: 309 RIPRVRGGGTHRSGQGA 359
R R+ G T+ + + A
Sbjct: 158 RAGRIHAGPTNDNDEEA 174
>11_01_0338 + 2522698-2523213
Length = 171
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 313 IRATARPVPQDSALV**PASLLTQ*GWRAFFDIDTWTSLTRSGLMGALNTNGRGSEA 143
+R+ ARP+P+ +AL P+S A I + + R G+M A G EA
Sbjct: 68 VRSAARPIPETAALTLVPSSSAAAMAKSAPVRIPSEAAAARRGVMWAAQAGGEDGEA 124
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 409 HGLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 290
+G+VG + PP H +P P P P P GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/78 (21%), Positives = 32/78 (41%)
Frame = +3
Query: 54 TSVD*TKMILVSTPTFKCRVYPEKSEVVAWASLPLPFVFNAPIRPDLVNDVHVSMSKNAR 233
+S+ T+ + P+ VYP+ SE +W+ PLP F P D + +++
Sbjct: 455 SSLPPTQSLYKGNPSSLRMVYPKVSEQNSWSQEPLPGPFVCPTSVDFFDQQDMTIFDQQI 514
Query: 234 QPYCVSKEAGHQTSAESW 287
Q + + + W
Sbjct: 515 QDNIAASPSTNLAKQNEW 532
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 361 SVTCAAADVCSRRPSRGGAGTVA*TYGRDVLPWPPPWQRPGYRSS 495
S+TC A V SRR +R G G A R+ PP Y SS
Sbjct: 176 SITCGANGVGSRRATRAGKGGAAAAAQREQHACQPPGGGAVYMSS 220
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 421 CQRLHGLVGANIRPPRHMLPNAPC 350
C L+G VG +IRP + + PN C
Sbjct: 256 CSHLNGPVGHDIRPIKRLKPNQEC 279
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 165 VFNAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 335
VF+ PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 336 T 338
T
Sbjct: 215 T 215
>06_03_0865 - 25516072-25517007
Length = 311
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 567 SPGPCPRPLTATRESSQQYAL*PEXXXXXXXXXXXXXRQHVSAVGSRDG 421
SP P P P A S+ QY PE +++++VG R G
Sbjct: 233 SPSPPPPPPPAAAASTTQYPFTPEFAAAMQEMIRAEVHKYMASVGVRAG 281
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 261 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 365
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -1
Query: 488 RYPGRCHGGG---HGSTSLP*VHATVPAPPRLGRRE 390
R+ HGG HG L HA P PP+ RR+
Sbjct: 47 RHEHPAHGGAQHAHGGEQLQLAHARTPTPPQQQRRQ 82
>03_04_0017 -
16468486-16468505,16468597-16468807,16469522-16470214,
16470338-16470398,16470624-16470706
Length = 355
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 515 NMPSSLNEDRYPGRCHGGGHGSTSL 441
N PSSL DR R HGGG + L
Sbjct: 190 NCPSSLEVDRRAQRDHGGGGAAVGL 214
>03_02_0538 +
9299639-9300046,9300362-9300509,9300648-9300652,
9302886-9303290,9303379-9304608
Length = 731
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 144 ASLPLPFVFNAPIRPDLVNDVHVSMSKNARQPYCVSK--EAGHQT 272
ASL +P F PI DL+ D + + + C+ + EAGH T
Sbjct: 295 ASLIVPDDFRCPISLDLMKDPVIVATGQTYERGCIERWLEAGHDT 339
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 379 PRHMLPNAPCPDLWVPPPRTRGIRATARPVP 287
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>10_08_0498 -
18342517-18342960,18343164-18343397,18343569-18343781,
18344095-18344238,18344348-18344470,18345094-18345169,
18345252-18345355,18345745-18345819,18345942-18346106,
18346248-18346346,18346478-18346677,18346767-18346846,
18346922-18347049,18347936-18348048,18348580-18348672,
18349264-18349348,18350116-18350233,18350326-18350399,
18350485-18350537,18350624-18350804,18351219-18351264,
18351355-18351432,18351556-18351626,18351735-18351798,
18352064-18352071
Length = 1022
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 141 WASLPLPFVFNAPIRPDLVNDVHVSMSK 224
W + +PF N +RPDL+ + H S+
Sbjct: 757 WPDIDMPFSANTGMRPDLIINPHAFPSR 784
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 255 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 413
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 198 NDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 368
+D+ ++ +R + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 369 MCRGGRMFAPTKPWRRW 419
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 334 PPPRTRGIRATARPVPQDSA 275
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,276,434
Number of Sequences: 37544
Number of extensions: 433105
Number of successful extensions: 1638
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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