Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M18
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   192   2e-49
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.83 

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  192 bits (468), Expect = 2e-49
 Identities = 91/163 (55%), Positives = 111/163 (68%)
 Frame = +3

Query: 111 VYPEKSEVVAWASLPLPFVFNAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWG 290
           VY EK E    + + LP VF  PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWG
Sbjct: 9   VYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWG 67

Query: 291 TGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXX 470
           TGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH                
Sbjct: 68  TGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAI 127

Query: 471 XXXXXXXLVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFL 599
                  L+QARGH+++++ E+PLVVSDKV+   KTK+AV+FL
Sbjct: 128 AASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFL 170


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 225 NARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 395
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 396 PTKP 407
             KP
Sbjct: 197 APKP 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,790
Number of Sequences: 27780
Number of extensions: 283934
Number of successful extensions: 875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)