Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M17
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.10 
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   3.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   8.9  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.9  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 303 SPRAPRGISRWPKPAPTDSSS-RLGTMARRNSAS 401
           +P  P G+   P PAPT S S RLG++ R  S S
Sbjct: 318 APFQPAGVGSVPLPAPTSSQSLRLGSLHRSRSPS 351


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 293 DYSVTASAKGDLEV-AEACPDGQFVK-IRN-NGTKELSLGGYSILRNAGDQETVFKFHRT 463
           D+S++ SA  D +  A    +  F K I+N     +++   YSI   AG   T+F F   
Sbjct: 44  DHSISDSALSDSDKNAFKDKNNDFWKAIKNAKNASDINFSDYSIFFAAGGHGTLFDFPSA 103

Query: 464 VKLEPGA 484
             L  GA
Sbjct: 104 TNLHKGA 110


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
 Frame = +2

Query: 221  RRGTPLRAARKRTLLDESEERSVQDYSVTASAKGD---LEVAEACPDGQFVKIRNNGTKE 391
            R+G  +       +  +  E S+Q   +  S  G    L++ +     +  KI  NG   
Sbjct: 908  RKGCDICCEEATYIKQDMTEFSLQAIKLLKSISGKATLLQLMDIFRGSKSAKIVENGWDR 967

Query: 392  LSLGGYSILRNAGDQETVF 448
            L   G   L N GD E +F
Sbjct: 968  LEGAGVGKLLNRGDSERLF 986


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 8   GIRHEAAQLREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQS 145
           G + E A +RE   + + +I  D+ + TY+     +EDR  L  Q+
Sbjct: 631 GSQQERANIRE--AIEENEIKYDILVTTYQLATNNKEDRSFLKHQN 674


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = +3

Query: 252 NAPSXXXXXXXXXXXXXSPRAPRGISRWPKPAPTDSSSRLGTMARRNSASAGIRSSAMRV 431
           ++PS             +   P   S     + + SSS   + A  +S+S+ I SS+   
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSS 279

Query: 432 TRRRCSSSTAL*SWSRVRSQPS 497
           +    S+S+ + S S   S P+
Sbjct: 280 SSSPTSTSSTISSSSSSSSSPT 301


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 435 WSPALRRIEYPPRLSSFVPL 376
           W PA+   E+   LSSF+PL
Sbjct: 276 WLPAVASKEHRKSLSSFIPL 295


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 303 SPRAPRGISRWPKPAPTDSSSRLGTMARRNSASAGI-RSSAMRVTRRRCSSSTAL*SWSR 479
           S   P   S     +P+ SSS+  + ++ +S+S+   +SS+   +  + SSS++  S S+
Sbjct: 150 SSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSS--SSSK 207

Query: 480 VRSQPSGPRT 509
             + PS  ++
Sbjct: 208 SSASPSSSKS 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,159
Number of Sequences: 5004
Number of extensions: 25725
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)